Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00996 ATGGCGTTGAAAAGCATGTGCAAGCATTGGTTGTGTCTGCCAAAGTCACACGTTGGTGAAGATGTAACTCCAATTGAACCTTTTCAACAGGGACAGTGGGCAAGTCTACCACCTGAATTGCTTTTGGACATAATCCAAAGGGTTGAAAAGAGTGAGACATCTTGGCCTGCACGTACTGCTGTTGTTTCTTGTGCTTCAGTATGTAAATCATGGAGGGCCATCACCAAAGAGATCATCAAGACTCCTCAACAATGTGGAAAGATTACGTTTCCTATTTCATTAAAGCAGCCTGCTCCCCGTGATTATCAAATACCATGCTTTATTAAGACGAAGAGAGAAACTTCTACATTCCTGTTGTACTTAGGTTTGGTGCCAACGAGGAATCAACGATGTAAGTTGTTATTAGCCGCCAGAAAGACAAGAAGGGCCACAGGCACGGATATTGTCATATCCTTGGCTGCAGATGATTTTTCTCAATCCAGCAAGAATTATGTTGGTAAACTGACGTCTAACTTTTGGGAAAACAAGTTCACTATATATGATACTCATTCTCCATATGATACTGCAATTCAACCAAACTGTCAAGGTGCGAGATTTAACTCGAAGCAGGTTTCGCTAAGAGCTCAAGCATGTTGCTGTCTTATTAGCACCATTTTGTATGACCGGAATACTCGCACGACTAGGAGGCCAATAAGAATGTCCTGCTTCATGAGCTCAATACCCGGCTCAGCTATCGATAAAGATGGAACCGCCCCGACTCCAACATCTTTACCTCCGGCACTGAAAAGGAAAAGTCCAATGACAGACTCATACTCCAACAGTGTATCAGAGCTACCAGGACTTAGTGAATGCTCTGTCACACCCTTGGTACTCTTAAGCAGACCTCACAAATGGTGTCAGCCGCAGCAGTGTTGGGCCAATGACCGTATTACGGTGAATTCAGTAAATAACTTTCAACTTGTAGCTAGTATGGATTTATCTCGTAATGTTTTCCCTGAAGAGAAAGATAGGGTAATCTTGCAGTTTGGAATGATTTCAACCAATACATTCATCATGGACTACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGTCAAGCTTTGTTGCTAAACCAATCCGTTAA 1134 0.4286 MALKSMCKHWLCLPKSHVGEDVTPIEPFQQGQWASLPPELLLDIIQRVEKSETSWPARTAVVSCASVCKSWRAITKEIIKTPQQCGKITFPISLKQPAPRDYQIPCFIKTKRETSTFLLYLGLVPTRNQRCKLLLAARKTRRATGTDIVISLAADDFSQSSKNYVGKLTSNFWENKFTIYDTHSPYDTAIQPNCQGARFNSKQVSLRAQACCCLISTILYDRNTRTTRRPIRMSCFMSSIPGSAIDKDGTAPTPTSLPPALKRKSPMTDSYSNSVSELPGLSECSVTPLVLLSRPHKWCQPQQCWANDRITVNSVNNFQLVASMDLSRNVFPEEKDRVILQFGMISTNTFIMDYSYPLSAFQAFAICLSSFVAKPIR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00996 377 SUPERFAMILY Tubby C-terminal domain-like 82 374 IPR025659 -
Car07g00996 377 Gene3D - 26 81 - -
Car07g00996 377 Pfam F-box domain 33 78 IPR001810 GO:0005515
Car07g00996 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 5 ISOFORM X1 8 375 - -
Car07g00996 377 Gene3D Tubby Protein; Chain A 91 377 IPR025659 -
Car07g00996 377 PANTHER TUBBY-RELATED 8 375 - -
Car07g00996 377 SUPERFAMILY F-box domain 28 77 IPR036047 GO:0005515
Car07g00996 377 Pfam Tub family 94 371 IPR000007 -
Car07g00996 377 PRINTS Tubby superfamily signature 148 164 IPR000007 -
Car07g00996 377 PRINTS Tubby superfamily signature 164 188 IPR000007 -
Car07g00996 377 PRINTS Tubby superfamily signature 212 239 IPR000007 -
Car07g00996 377 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Car07g00996 377 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Car07g00996 377 PRINTS Tubby superfamily signature 356 377 IPR000007 -
Car07g00996 377 MobiDBLite consensus disorder prediction 246 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00996 Car-Chr7 8827226 8829978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00996 16 375 TUB Transcription Factor Family AT2G18280 51.752 4.23e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car07g00996 Tub 9.6e-70 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00996 K19600 - gmx:100777506 449.514