Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00986 ATGGGAGGCGGCGATCCCTCCATGTCAGACATGGAAGAAGAGGAAGAGGAGAACAATTCAACTGACATTCTCTCACGATTTAAACTCGTTGATGCTCCTGCACTAATTTTCGTTTGTTTCCACCAAGCTCTGCGCTCTGAACTCGATCAGCTTCGTGTATTCGCTGAAACGGCATCGTTAGAGGATGATCCGCACCGTCTCCAAGAAATAATTGTTAAGCTTCAACAAAGATTTCGGTTTCTGAAAATAGCTCTTAAGTATCATTGCGCTGCAGAAGACGAGATTATCTTCCATGCACTGGATAAACATGTCCAAAATGTTGTTTGTACATATTCCCTTGAACATAACAGCACCGATGGGCTGTTTGATTCTATCTTACAGTCCTTGGATGAGCTGATGGGTTCTAATGAGAATGTTACCAAGTTGCTCCGAGAACTTGTGTACCGTGTTGGCATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAACAGGTTTTTCCTCTGTTGATCCAGAAATTGTCTACTAAAGAACAAGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTCTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTTAAAGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAGACAAACCTTCACTGAGACATATTCTCAGAGTGAAGAACTTCAAGGTTCCCATGGATTGATATATACAGAAAGATTGTTTGGGCCGAGTTCTTGCAATAGGAACTCCAAGGAAATTTCAAGTAAGACGAAAGTGAACGGTAAGGAAACAGAAGATGGGGTCAACCAGGTTAAAGTTCTTCATCTTTGGCACAATGCCATCAAGAAGGATTTGAAAGAAATCCTGCAAGAAGCTTATCTAATAAGAAGTTCCAGCTGTTTTGAAAATTTAGACTCAATACTTATCCAACTAAAGTTCTTGGCCGATGTCCTCATTTTCTACAGCAATGCTCTGAAGAAATTCTTTCATCCTGTACTGGAAAAACTTTCCCATGACTGCTTTTCCAAGTCTACTGAACATTTTCTAGGTGAAAGTCACATTGAAGTTATACAACAGTTGCTATTCTGTAACTCAGAAAGTGGAATGCCTTTGCCCAATTTTGTAGAAAAGCTTTGCGGAACACTTGAAATATTTGTATCAGCAGTCAACAAACAATTTTCTCTTCAAGAAATTGAGGCGTTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCTTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAAGAATCCAGGTCCATTCTCTATTGCATAAGGGAAGGTAATAATTCTGTTGGTGACGCTTTTGCGCCATTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAACCTCAATTGAAAAGTTCCGACAGGACTTGCAGCATATGTTCAAAAGAAGGCACTCTTTTTCCTCTGAGAAAATGAAGGAAACTTGTGGGTTTTCATTCTTAAATTCTGACAAGCAGCCACATGAAAGTTGTAGCAAGAATTGTTTGTCATATTCCTCATCTTCTGGATCCAAAAATGTGAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCACATATTTTTCCCCGACACTGCTATGAAGTTAAATCAGTATCCCAGATTTCACGAATCAAATCCTTTTATTTCCTTTCTTAACGATCCAAAACCAATTGACCTGATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGAACATGGTGAGATGGTTATAGATTTCCACAAACGATTCCACCTCATATGTTTTCTTCATCAAATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAATAGGTCAACTCAAAAACATTAGCCTTGCCTACGCCTTTGATCACAAACATGAAGTTGAGCACTTCAGTAAAATATCTCGCATTCTTGATAAGATGTCTGAATTACATCTTTCAGTTTCTACTACTGATTCAAGGATAAGGGACAAGAGAATGCTAAGACGTCATCATTTAATCAAGAAGCTTCAAGAAATGTGCAAATCAATGAATAAGTTACTTTCTGATCATATAAACCGTGAGGAAATAGAAATTTGGCCTAGAATTAGAGAATTCTTCTCGAATCGGGAGCAAGGGAATATCATAGGATGCATTCTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCTTGGCTAATGTCATCTTTAACACAGGAAGAGCAACATGTTTTAATGTTCTTATGGTCCATGGCTACTAAGAATACGATGTTTGATGAATGGTTAAGCGAATGGTGGAATGGGTACAGTTTAGCCAAGGTAACAGATGGATCAAAAGATGCTCCTCTACGGAATGCTGAGCCACTGGAGATTATAACCAAATATTTGTCTGAAGAAGTTCTTAATGAATTACAAGTAGAATCTTCTGCCATCGAAAGCATAGATTTTTGGCAGAAGGATCATATTGGTGATAATTTTGATTTGTCCAACAACAGTGTTGATGACAATGATAAGGTTCAATGTCCTGAAAAAACTTTCGGTCAATGTTCAAAATGCACAAATCAATTTCATGATATTAAGAAACATACCTGCAATGAAGTAACAGCTACCAAAAATCCGATCTACCATGAAAGTCAGTCATTTCAATATTTTGACAAGTCCAGGCATTATGACCGACTTCTGAAATTGAGTCAAGCTGATCTGGAGAGGGTAATAAGAAGGGTGTCTCGTGACTCTTGTTTAGATCCTCGGAAAAAGTCATACATAATACAGAGCCTACTAATGAGCCGTAGGATTATTAGACAACATATATCTTCTACAGATGTCAATATCAAAAGCGATGGACAGGAATTTCCTGGGAGACATCCATCTTACAGGGACCCTCTGAAACAAATCTATGGTTGCAAACACTACAAGAGGAACTGTAAGCTTTTTGCTCCCTGCTGCAACCAACTTCATGCTTGCATTCATTGCCATGATGAGGCATCCGATCATTCAATTGACAAAAAATCTGTCACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAATGCCACATGCTCATCAGTTTCTTGCTGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGAGGATGAAAGGGAAATTTATCACTGTCCCTATTGCAACTTATGCCGAGTTGGAAAGGGTTTGGGTGTTGACTATTTTCATTGTATGAATTGCAATGCTTGTATGGCTCGCTCTCTTATGATACATGCATGCAGGGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATCTTTACATCCCTCTCTCCGGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAGCATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCATTATTGGCTGAGGAGGGAATTTCTGACGAGTTTTCGGGTCAAACTCAGGCTAGTCAGCTATTTTTCTTACTTCCCGTCTCATATTAA 3726 0.3881 MGGGDPSMSDMEEEEEENNSTDILSRFKLVDAPALIFVCFHQALRSELDQLRVFAETASLEDDPHRLQEIIVKLQQRFRFLKIALKYHCAAEDEIIFHALDKHVQNVVCTYSLEHNSTDGLFDSILQSLDELMGSNENVTKLLRELVYRVGILQTSIYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKQAEVTQCFKEIAPMERALQEVLVSWLGSNRQTFTETYSQSEELQGSHGLIYTERLFGPSSCNRNSKEISSKTKVNGKETEDGVNQVKVLHLWHNAIKKDLKEILQEAYLIRSSSCFENLDSILIQLKFLADVLIFYSNALKKFFHPVLEKLSHDCFSKSTEHFLGESHIEVIQQLLFCNSESGMPLPNFVEKLCGTLEIFVSAVNKQFSLQEIEAFPIFRKNCRNGMQVRLLSLSLHMMPLGLLKCVITWFSVHLSEKESRSILYCIREGNNSVGDAFAPLLHEWFRIGYSGKTSIEKFRQDLQHMFKRRHSFSSEKMKETCGFSFLNSDKQPHESCSKNCLSYSSSSGSKNVNKYETPYSTGINLHIFFPDTAMKLNQYPRFHESNPFISFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEEHGEMVIDFHKRFHLICFLHQIHSDAEDEIVFPALEAIGQLKNISLAYAFDHKHEVEHFSKISRILDKMSELHLSVSTTDSRIRDKRMLRRHHLIKKLQEMCKSMNKLLSDHINREEIEIWPRIREFFSNREQGNIIGCILGRISAEILQDMIPWLMSSLTQEEQHVLMFLWSMATKNTMFDEWLSEWWNGYSLAKVTDGSKDAPLRNAEPLEIITKYLSEEVLNELQVESSAIESIDFWQKDHIGDNFDLSNNSVDDNDKVQCPEKTFGQCSKCTNQFHDIKKHTCNEVTATKNPIYHESQSFQYFDKSRHYDRLLKLSQADLERVIRRVSRDSCLDPRKKSYIIQSLLMSRRIIRQHISSTDVNIKSDGQEFPGRHPSYRDPLKQIYGCKHYKRNCKLFAPCCNQLHACIHCHDEASDHSIDKKSVTKMMCMKCLMIQPINATCSSVSCCNLSMAKYYCRICKLFEDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMARSLMIHACREKSLEENCPICHEYIFTSLSPVKALPCGHVMHSACFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEGISDEFSGQTQASQLFFLLPVSY 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00986 1241 Pfam Ring finger domain 1155 1197 IPR001841 -
Car07g00986 1241 CDD Hr-like 36 170 - -
Car07g00986 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1092 1155 IPR017921 -
Car07g00986 1241 ProSiteProfiles Zinc finger RING-type profile. 1156 1198 IPR001841 -
Car07g00986 1241 Gene3D nmb1532 protein domain like 34 190 - -
Car07g00986 1241 Gene3D nmb1532 protein domain like 606 779 - -
Car07g00986 1241 SUPERFAMILY RING/U-box 1155 1206 - -
Car07g00986 1241 CDD Hr-like 612 758 - -
Car07g00986 1241 Pfam CHY zinc finger 1027 1102 IPR008913 GO:0008270
Car07g00986 1241 Coils Coil 731 751 - -
Car07g00986 1241 CDD RING-H2_Pirh2 1155 1198 - -
Car07g00986 1241 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Car07g00986 1241 ProSiteProfiles Zinc finger CHY-type profile. 1020 1089 IPR008913 GO:0008270
Car07g00986 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1230 - -
Car07g00986 1241 SMART ring_2 1156 1197 IPR001841 -
Car07g00986 1241 SUPERFAMILY Zinc hairpin stack 1093 1143 IPR037275 -
Car07g00986 1241 SUPERFAMILY CHY zinc finger-like 1018 1084 IPR037274 GO:0008270
Car07g00986 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1149 1200 IPR013083 -
Car07g00986 1241 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 24 1230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00986 Car-Chr7 8707573 8718221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00986 598 829 C2H2 Transcription Factor Family AT3G18290 24.255 7.70e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00986 K16276 - gmx:100802706 1878.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00986 07 8707573 8718221 Car07g00986 07 8707573 8718221 ECH