Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00970 ATGGAAGCTAACAAGCTTAGATTGCTCTGTTTTTGTGTATTTTATCTTGCTTTATTCCCTACCCTTAGGGCTAGTATAGCTCACGACGCCCAATTTTGGCAAACACGAGCCCGTGAAGCTAAACAGGCTGCACAAAAAGCTTATAAACCAAACCCTCATGATATAGCTCTTACTTTCAATAAGCATGTCGACAAGAGTTTTAAAAGTTCCAATGGAACAAGGAGGGGTTTGTCCAAATACACTGGTCCATGCTTAGCCACAAATCCAATTGATAAATGTTGGAGATGTGATCCAAATTGGGAAAAGAATCGCAAGAAGCTAGCAAATTGTGCTCTTGGTTTTGGTCACGGCACAACAGGAGGCAAAAATGGAAAAATCTATGTTGTCACCGATTCATCAGACCATGATCTTATCAACCCAAAACCAGGAACATTGCGACATGCTGTCATTCAAAACGAGCCATTATGGATCATTTTTAAACATAGCATGAATATCAAATTGAGTTCAGAGCTTATATTCACCGATAACAAGACGATAGACGCACGTGGTGCAAATGTTCATATTAGTAATGGTGCTCAAATGACATTGCAATATGTGAAAAATATTATCATTCATGGATTACATATCCATGATATCAAAAAAGGTGGTGGTGGCCTCATTAGAGACTCCGTGAATCACTATGGTTATCGTTCGAGTAGCGATGGTGATGCAATTTCATTGTTTGGATCTAGTCATGTTTGGATAGATCATATTTCACTATGGAATTGTGACGATGGTTTGATTGATGTCGTAGAAGGATCAACAGCTATTACCATTTCTAACTGCCATATGACACGTCATAATGATGTTATGTTATTTGGAGCAAGTGATGGATATTCAGGAGATAAAGTGTTGCAAGTAACTGTGGCATTCAACCATTTTGGAAAAGGATTGATACAAAGGATGCCAAGGTGTAGATGGGGTTTCTTTCATATTGTTAACAATGATTACACTCAATGGGTTATGTATGCCATTGGTGGTAGCCAACAACCCACAATCCTCAGTCAGGGTAATCGATTTATTGCTCCAAATAATCCAAATGCAAAAGAGGTGACAAAGAGGGACTATGCAGCTGAAAGTGTATGGAAGACATGGAGTTGGACATCAGAGAATGACTTGATGAGGAATGGAGCCTTCTTTGTTCAATCTGGAAAAAAGAGTGGAAATTTTCCAAAGACAGATATCAAGGCAAAACCTGGGAGTTATGCAGCAAGTCTTACACGCTTTTCAGGTGCTATTAAATGTGTAGTAAATAAGCCATGTTGA 1305 0.3885 MEANKLRLLCFCVFYLALFPTLRASIAHDAQFWQTRAREAKQAAQKAYKPNPHDIALTFNKHVDKSFKSSNGTRRGLSKYTGPCLATNPIDKCWRCDPNWEKNRKKLANCALGFGHGTTGGKNGKIYVVTDSSDHDLINPKPGTLRHAVIQNEPLWIIFKHSMNIKLSSELIFTDNKTIDARGANVHISNGAQMTLQYVKNIIIHGLHIHDIKKGGGGLIRDSVNHYGYRSSSDGDAISLFGSSHVWIDHISLWNCDDGLIDVVEGSTAITISNCHMTRHNDVMLFGASDGYSGDKVLQVTVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTQWVMYAIGGSQQPTILSQGNRFIAPNNPNAKEVTKRDYAAESVWKTWSWTSENDLMRNGAFFVQSGKKSGNFPKTDIKAKPGSYAASLTRFSGAIKCVVNKPC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00970 434 Pfam Pectate lyase, N terminus 32 77 IPR007524 GO:0030570
Car07g00970 434 Pfam Pectate lyase 170 353 IPR002022 -
Car07g00970 434 Gene3D - 87 427 IPR012334 -
Car07g00970 434 SUPERFAMILY Pectin lyase-like 88 416 IPR011050 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Car07g00970 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Car07g00970 434 PANTHER PECTATE LYASE 8 434 - -
Car07g00970 434 PANTHER PECTATE LYASE 18-RELATED 8 434 IPR045032 GO:0030570
Car07g00970 434 SMART amb_all 162 359 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00970 Car-Chr7 8555660 8557944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00970 1 434 Polysaccharide Lyase AT3G01270 54.105 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00970 K01728 - gmx:100801864 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00706 02 9385804 9390357 Car07g00970 07 8555660 8557944 ECH
Car07g02079 07 25478812 25481130 Car07g00970 07 8555660 8557944 ECH
Car07g00970 07 8555660 8557944 Car07g00970 07 8555660 8557944 ECH