Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00935 ATGGGTAGAGTTAAACTAAAGATAAAGAAATTGGAGAGCACAAGCAACCGCCATGTGACTTATTCGAAGCGGAAAAGTGGAATCTTAAAGAAAGCAAAGGAATTATCAATATTATGTGATATTGATATTCTCCTTCTCATGTTTTCTCCAACGGGAAAGCCTACCTTGTTACAAGGAGAGCGCGGCAATATGGAGGAGATTATTGCAAAATTTGCCCAACTTAGTCCACAAGAAAGGGCCAAAAGAAAAATGGAAAGTCTCGAAGCACTGAAAAAAACTTTCAGGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACAATAGAGGAGTTAACTCATCAAATGAGAGTTTTACAATTTCAGCTCGCAGAAATACAACAGAGACTGAGCTATTGGAATAACATGGAGAAGATCAATAATTTAGAACATCTTAGACAAATGGAAGATTCACTCAGGGAATCAATCAACCGGTTGTGTTTACAAAAGGAAAATTTAGGGAAGCGACAACTAATTTCACTTGAATGCGCTAACCAATTACCAGAAGGAATGACTTTACCGTTGATGATGGCTGATCTACAAGAATCTCAACCCTTGTCTTGGCTTCTAAGTGGTGATAATCATCAATTGATGTTACATAGTGAACCAAAATATCTTCCATTTAGTGATAATGGCAATAAAGAGGTCGAATGCTCCAATGACATTTCACTCACAGGATATTCTGGTTATATTGGGAATGGCAAACTTGAGGTTGGGAGCTCTCCACATGTCACAACTTTGGGTCAGGGAGGTGGTGGTTCCTTGAATGAGTTAAATGGAAATCCTTACATAAATGTACAACATTGTGAGCAATTTGCATACCCTCCTCCACCGAATCTCGAGGAAGCAAAACATCACCAAACAATGAATAGTAAACAAGATAATGTAGATTACCAAGTTAATAACAATTATGAACTTCCTAGAGCACTATTTGAAAATGGACACCAGTTATGGAATTCTACTTCTGGCTCTTGTGGGATTGCCATGTATAATGAGAATGGTTACCATAGGTAA 1068 0.3755 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERGNMEEIIAKFAQLSPQERAKRKMESLEALKKTFRKLDHDVKIQDFLGSSSQTIEELTHQMRVLQFQLAEIQQRLSYWNNMEKINNLEHLRQMEDSLRESINRLCLQKENLGKRQLISLECANQLPEGMTLPLMMADLQESQPLSWLLSGDNHQLMLHSEPKYLPFSDNGNKEVECSNDISLTGYSGYIGNGKLEVGSSPHVTTLGQGGGGSLNELNGNPYINVQHCEQFAYPPPPNLEEAKHHQTMNSKQDNVDYQVNNNYELPRALFENGHQLWNSTSGSCGIAMYNENGYHR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00935 355 Coils Coil 77 97 - -
Car07g00935 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car07g00935 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Car07g00935 355 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Car07g00935 355 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 354 - -
Car07g00935 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g00935 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g00935 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g00935 355 Coils Coil 114 134 - -
Car07g00935 355 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 354 - -
Car07g00935 355 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Car07g00935 355 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car07g00935 355 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00935 Car-Chr7 8278530 8282198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00935 1 277 Type I MADS-box Gene Family AT2G03060 50.350 2.93e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car07g00935 SRF-TF 8.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00935 - - pvu:PHAVU_003G189100g 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00935 07 8278530 8282198 Car07g00935 07 8278530 8282198 ECH