Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00905 ATGGAAAAAGATCAAGTTCAAGAATTCAAACACGCTTGCAAGTTCTGCAACAAAAGCTTCCCTTGTGGTAGATCCTTAGGAGGTCACATGAGGTCACATATCAACAACTTATCATCTGAAACAGAACAAAAAGAAAAGCTTCCAATAAAAAAGCTTCCATCTTTAACAAACAACAATGGTGGAAGTGGTGGAAGTTGCATTGGTTCTGAAGCTGCAACTAATGCTGGCTATGTTCTAAGAGAGAATCCAAAGAAAACATGGAGAATTTCAGATTCAAGTGAAGACAATTTGTTGGATGTGTATGACAAGTTATGCAAAGAGTGTGGAAGAAGTTTTGTTTCTTGGAAAGCTTTGTTTGGTCACATGAAATGCCATTCAGATAAAGAAAGAGTTTGTAATAGCTTGGAGGATCAAGATTCATCATGGACtaataataatgttaattctaagatgatgatcatggataGTAGTCAATCAGACAATGAAATCACTACTGCTCCAAATAAAAGGAGAAGATCAAAGAGAACAAGAACAAGGTATATGGTAGCTGCTGCTGCAGCAACAACTTCTTCTCTGTCTTTTGCTAATATTCCTTCTTATTCTTCTCTTTCTGAAGTTGAACAAGAGCAAGAAGAAGTTGCTATGAGCTTGATTATGCTTAGTAAGGATGTTAGTCCTTGGAGTGGTCTTCAGTCTCTTGCTACTGCTGAATCATCTGATAATAACTCTCCTTACTTCGAACCGAGGACTCGTTCCTCAGTTCGAACTAACCTCGTTACTAAATTCGATGCGAACAACAATAGTTCTATTACTGCTACTATTAATATTGCAAAGTTGATGAAGAAAAGTGAGCACAATAAGTGTGAGTTAGGAAATTCTGTTTCCAAAAATTTCAACTTCAAAGGAAAAAGTTTAGAAATTTTGGATACTGATAAAGGATTTAGGATGAACAAAGTTACAAAATCTGAGCTTGATTATCTGTCTACTACATTGGAAGATTCTGAAGTTGAAAATGGGAAAAACAGAGTCAATGGAAGAAGAACAGAATCAGTTTTATCAAAGAAAAAGTTGTTGGATTCTGAATTGAAGTCAAGTTCCTTAAAGAATTGTGTGAACAAGCCTTTTCATGATGAAGATGAATTCATCAAGAACAATTCTAACAAAAGAGGAAAATTTGAGTGTACTACTTGCAACAAAATCTTCCATTCATACCAAGCACTTGGAGGCCATAGAGCTAGTCATAAAAAAACCAAAGGTTGTTTTGCTTCCAAGATTGAGAATAGTGAAAACAGCATTGAAACTGATCTCTCTCCTGAACAAACTGTTGCTGCATATGTCAAACACGGACATAATAATATTAGTCTGAGTCGTGGACTAGGTCGCAGTGAATATGTTGAAAAGATTGCAGATACTGTTAAAGAGACCAAGAAGATTAAAGGGCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGACAAGCCTTAGGTGGACATAAGAGATCTCATATGGTTGCAGCTGGTGTTGTTTCTGAGAGTAGAGTTGTAGTTCATGAACAAGTTCCACAAATTAGGGACTTTCTTGATCTCAATCTTCCTGCTGCTACTGAAGAAGAAAGTAATAGTCATGCTGATTCTAACAGACCTTGGTGGATAGTAGAAGGTAACCATAAACAAGAGGAACTTGTAGGGTAG 1695 0.3587 MEKDQVQEFKHACKFCNKSFPCGRSLGGHMRSHINNLSSETEQKEKLPIKKLPSLTNNNGGSGGSCIGSEAATNAGYVLRENPKKTWRISDSSEDNLLDVYDKLCKECGRSFVSWKALFGHMKCHSDKERVCNSLEDQDSSWTNNNVNSKMMIMDSSQSDNEITTAPNKRRRSKRTRTRYMVAAAAATTSSLSFANIPSYSSLSEVEQEQEEVAMSLIMLSKDVSPWSGLQSLATAESSDNNSPYFEPRTRSSVRTNLVTKFDANNNSSITATINIAKLMKKSEHNKCELGNSVSKNFNFKGKSLEILDTDKGFRMNKVTKSELDYLSTTLEDSEVENGKNRVNGRRTESVLSKKKLLDSELKSSSLKNCVNKPFHDEDEFIKNNSNKRGKFECTTCNKIFHSYQALGGHRASHKKTKGCFASKIENSENSIETDLSPEQTVAAYVKHGHNNISLSRGLGRSEYVEKIADTVKETKKIKGHECPICFKVFQSGQALGGHKRSHMVAAGVVSESRVVVHEQVPQIRDFLDLNLPAATEEESNSHADSNRPWWIVEGNHKQEELVG 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00905 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 392 419 IPR013087 -
Car07g00905 564 SUPERFAMILY beta-beta-alpha zinc fingers 392 503 IPR036236 -
Car07g00905 564 MobiDBLite consensus disorder prediction 157 176 - -
Car07g00905 564 SUPERFAMILY beta-beta-alpha zinc fingers 11 125 IPR036236 -
Car07g00905 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Car07g00905 564 SMART c2h2final6 481 503 IPR013087 -
Car07g00905 564 SMART c2h2final6 392 414 IPR013087 -
Car07g00905 564 SMART c2h2final6 103 125 IPR013087 -
Car07g00905 564 SMART c2h2final6 11 33 IPR013087 -
Car07g00905 564 Gene3D Classic Zinc Finger 1 130 - -
Car07g00905 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Car07g00905 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 481 503 IPR013087 -
Car07g00905 564 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 564 - -
Car07g00905 564 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Car07g00905 564 Pfam C2H2-type zinc finger 392 416 - -
Car07g00905 564 Pfam C2H2-type zinc finger 105 127 - -
Car07g00905 564 Pfam C2H2-type zinc finger 11 33 - -
Car07g00905 564 Pfam C2H2-type zinc finger 481 504 - -
Car07g00905 564 Gene3D Classic Zinc Finger 389 503 - -
Car07g00905 564 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Car07g00905 564 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 564 - -
Car07g00905 564 ProSitePatterns Zinc finger C2H2 type domain signature. 483 503 IPR013087 -
Car07g00905 564 ProSitePatterns Zinc finger C2H2 type domain signature. 394 414 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00905 Car-Chr7 8044091 8046340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00905 376 542 C2H2 Transcription Factor Family AT2G45120 43.860 3.60e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car07g00905 zf-C2H2_6 1.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00905 - - gmx:102666705 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00905 07 8044091 8046340 Car07g00905 07 8044091 8046340 ECH