Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00888 ATGGACCTAAGCCCGTCTTTCTTAAATGAGAAAAAATGGGTGCATTCTAATATGTTTTCTCTTGAAAGCTACATAAACCCATTCCCTACGATAAATACAAATATCTTCCCTAGGGTTTTAGACACAGACAAGTTCAACACAGAACGCAGGTTACAAGTTACATCAATGGCTTTCTTTGGTAAACTCGGGAATATTCTACGACAAGGGGCAAATAGAAAGATTATTTCAGAATTGCGTCCATCTCCATCTGTTTTCCAGGCTATAAGATGCATGAATTCTGGTCCAACCACAAAGCTCTTTATTGGGGGTGTTTCGTATTCAACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCACGATATGGTGAAGTTATTGATGCAAGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGCCTTTATCACATTCAATTCTGTTGAAGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGTCGGGTTAGGGTAAACTATGCTAGTGAAAGGCCTCGTGGATATGGTGCTGGCGGTGACGGAGGTTTTGGTGGTTCTTATGGCAATGCATCCTATGGTGGTGGAGGTTCTCCATACGGAGGTTATGGGGGCTCTCCATACGGTGGTGCTTCAAGTGGTGGTAGCTATGGTGGAAATGTAGAGGGAGGTTATGGTGGAGGGCCAGGTGGCAATTATGGGGCCAGTGGTGCTGGCAATAACTATTCTGCTCCTGATGGTTTTGGAACTAGCAATGCTGCTGGCAGTTACGGTGGAAGTGGGGCGAATTATGGAAATGATGGTAACATTGCTAGTGGAAACACTTACACCAGGGAACACTTACACCGGGGAGTCTCTGGTGGTGGATATGATGGAAGTGGTGGATATGATGGAAGTGGGGGATTGGGATATGGCAGCAGTGGCCAATTTGATAGCAAAGACAGTGGCAATTTAAATGAGGATTTCGGAGGTTCCGGGGGCTCCATTGAAGGAAATTATAGGGATGATGATGATACTGATCATTTTGCCAAAAGGGCCTGA 1053 0.4501 MDLSPSFLNEKKWVHSNMFSLESYINPFPTINTNIFPRVLDTDKFNTERRLQVTSMAFFGKLGNILRQGANRKIISELRPSPSVFQAIRCMNSGPTTKLFIGGVSYSTDEQSLREAFSRYGEVIDARIIMDRETGRSRGFAFITFNSVEEASSAIQALDGQDLHGRRVRVNYASERPRGYGAGGDGGFGGSYGNASYGGGGSPYGGYGGSPYGGASSGGSYGGNVEGGYGGGPGGNYGASGAGNNYSAPDGFGTSNAAGSYGGSGANYGNDGNIASGNTYTREHLHRGVSGGGYDGSGGYDGSGGLGYGSSGQFDSKDSGNLNEDFGGSGGSIEGNYRDDDDTDHFAKRA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00888 350 CDD RRM_HP0827_like 98 173 - -
Car07g00888 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Car07g00888 350 MobiDBLite consensus disorder prediction 301 350 - -
Car07g00888 350 MobiDBLite consensus disorder prediction 309 326 - -
Car07g00888 350 Gene3D - 89 210 IPR012677 -
Car07g00888 350 MobiDBLite consensus disorder prediction 335 350 - -
Car07g00888 350 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 56 281 - -
Car07g00888 350 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 56 281 - -
Car07g00888 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 169 IPR000504 GO:0003723
Car07g00888 350 SUPERFAMILY RNA-binding domain, RBD 93 202 IPR035979 GO:0003676
Car07g00888 350 SMART rrm1_1 98 171 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00888 Car-Chr7 7905695 7908712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00888 99 177 C2H2 Transcription Factor Family AT2G19380 32.911 1.39e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00888 K12741 - gmx:100799124 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00888 07 7905695 7908712 Car07g00888 07 7905695 7908712 ECH