Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00884 ATGGCAAAATCCGTAAGCCCAAACGCCATCTCCACCTTGCTTTCAAACCCATCACCCGATTCTTCATCAGATCTTCCTGATATTGTAGTTCAAGTTCTCGATCTCAAACAAAGTGGCAACAGATACATGTTCTCTGCGAATGATGGAAATATGAAACTAAGAGCGATTCTTCCTTCGAATCAGTACTCAGAGGTTCTCTCAGGGAAGATTCAGAACCTTGGTCTCATTCGCATCCTGGATTATACTCTCAACGACATCCCAAATAAATCTGAGAAGTACCTTATTGTTACCAAGTGTGAACCGGTTTCTCCTTCGCTTGAAACGGAGATAAAAAGTGAACAATCTGGTATCGTTTTGAAGCCTAAGGAAGATGTTGTAGTTAAGAGCGAAAGCGCGGCTGGTATTCTTTTGAAGCCGAAGCAGGATGTGGTTTCAAAATCTGCTGCTCAGATTGTACATGAACAACATGGAAATTCTGCTCCTGCGAGATTGGCTATGACACGCAGGGTGCGTCCTCTTGTTTCTTTAAATCCTTATATGGGTGGCTGGACAATTAAAGTAAGTGTCACAAGCAAAGGAACCATGCGTACATATAAGAATGCCAGAGGCGAAGGTTGTGTCTTCAATGTTGAACTCACTGATGAAGATGGTACTCAAATTCAAGCAACTATGTTTAATGAAGCTGCTAGAAAGTTTTATGACAGATTTGTTATGGGAAAGGTTTATTACATTTCAAAAGGAACTTTGAAAGTTGCTAACAAACAGTTCAAGACTGTGCAAAATGATTATGAAATGACACTGAATGAGAATTCTGAGGTGGAAGAGGTTGTCAATGAAGTTGGTTTTGTTCCAGAGACAAAATTCAATTTTGTCCCGATTGATCAGCTGGGTCCTCATGTCAATAAGCCTGAACTTGTTGATGTTGTTGGAGTTGTTAAGAACGTGTCTTCAACAATGAGCATTCGAAGGAAGAGCAACAATGAGAGTGTTCCAAAGCGTGACATTACTATTGCTGATGAAACCAAGAAGACAGTTGTCGTGTCTCTGTGGGGTGACCTTGCAACTAACATAGGACAAGAGTTACTGGATGCTGCTGATCAATCTCCAGTAGTTGCGATCAAATCCCTCAAGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTTTAGTTCTGATTAATCCAGACACTCCTGAAGCTCAGAAGCTTAGAAGCTGGTATGATTCTGAAGGTAAGGATGCTTCAATGGCTGCTTTAAGCTCTGGTTCAATTCCGGCATCCAATGCTGGTAGTAGATCTGTGTACTCTGATCGTGTATCACTTGCTGACATTACCTCTAACCATTCATTGGGGAGCGAGAAGCCTGCATTCTTTAGTATCAGAGGATACATAAGTTTCATAAGGCCAGATCAGGCAATGTGGTATCGTGCTTGTAAGACTTGCAATAAGAAAGTTACTGAAAGCATTGATGCTGGGTACTGGTGTGAAAGTTGCCAGAAAAATGATGAGCAATGCAATTTAAGATATATCATGGTTGCAAGAGTTTCTGATGCAAGTGGTGAGGCTTATATATCCGCTTTTAATGAGGAAGCTGAGAAGATAATTGGGTGTTCTGCTGATGAGCTAGACAGCCTTAAATCACAGGAGGGAGAAGACAATCCTTATCAAATGAAATTGAAGCAATCCACCTGGATTCCACACCTCATCCGGGTTAGCGTTTCTCAGAATGAGTATAATAATGAGAAGAGGCAAAGGATAACAGCACGTGCAGTTGTTCCTGTTGATTTTGCTGCTGAATCTAAATTTCTCCTTGAAGACATATCCAAGATGAGTGCTTCTCAATAA 1854 0.411 MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKQSGNRYMFSANDGNMKLRAILPSNQYSEVLSGKIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPSLETEIKSEQSGIVLKPKEDVVVKSESAAGILLKPKQDVVSKSAAQIVHEQHGNSAPARLAMTRRVRPLVSLNPYMGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFVMGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVVNEVGFVPETKFNFVPIDQLGPHVNKPELVDVVGVVKNVSSTMSIRRKSNNESVPKRDITIADETKKTVVVSLWGDLATNIGQELLDAADQSPVVAIKSLKVGDFQGVSLSAISKSLVLINPDTPEAQKLRSWYDSEGKDASMAALSSGSIPASNAGSRSVYSDRVSLADITSNHSLGSEKPAFFSIRGYISFIRPDQAMWYRACKTCNKKVTESIDAGYWCESCQKNDEQCNLRYIMVARVSDASGEAYISAFNEEAEKIIGCSADELDSLKSQEGEDNPYQMKLKQSTWIPHLIRVSVSQNEYNNEKRQRITARAVVPVDFAAESKFLLEDISKMSASQ 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00884 617 SUPERFAMILY Nucleic acid-binding proteins 1 104 IPR012340 -
Car07g00884 617 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Car07g00884 617 Pfam Replication factor-A C terminal domain 460 606 IPR013955 -
Car07g00884 617 Gene3D - 169 278 IPR012340 -
Car07g00884 617 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 611 - -
Car07g00884 617 CDD RPA1_DBD_C 444 612 IPR013955 -
Car07g00884 617 SUPERFAMILY Nucleic acid-binding proteins 439 613 IPR012340 -
Car07g00884 617 Gene3D - 283 423 IPR012340 -
Car07g00884 617 SUPERFAMILY Nucleic acid-binding proteins 288 416 IPR012340 -
Car07g00884 617 CDD RPA1_DBD_A 172 267 - -
Car07g00884 617 Pfam Replication protein A OB domain 299 396 IPR031657 -
Car07g00884 617 MobiDBLite consensus disorder prediction 1 23 - -
Car07g00884 617 SUPERFAMILY Nucleic acid-binding proteins 171 278 IPR012340 -
Car07g00884 617 Gene3D - 424 613 IPR012340 -
Car07g00884 617 CDD RPA1_DBD_B 312 411 - -
Car07g00884 617 Gene3D - 4 112 IPR012340 -
Car07g00884 617 PANTHER REPLICATION FACTOR A 1, RFA1 5 611 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Car07g00884 617 Pfam OB-fold nucleic acid binding domain 184 269 IPR004365 GO:0003676
Car07g00884 617 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00884 Car-Chr7 7857162 7860659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00884 1 617 Core DNA Replication Machinery Family AT5G08020 69.144 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00884 K07466 - qsu:112017680 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00884 07 7857162 7860659 Car07g00884 07 7857162 7860659 ECH