Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00874 ATGGGAAGAGGGAGAGTTGAACTAAAGAGGATAGAAAACAAAATTAACAGGCAAGTTACTTTTGCTAAGAGAAGAAATGGGATACTCAAAAAAGCTTATGAGCTTTCACTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAACCGTGGAAAGCTCTATGAATTCAGCAGCACTTCATGCATGATGAAAACACTAGAGAAATACCACAAGTACAATTACTGTGCCCTGGAGACCAACCAACCAGCCAATGACACTCAGAATTACCAGGAATACGTGAGATTAAAAGCAAACGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTCGGGGAAGATATTGCCCAAATGAATACAAATGAGCTCGAACAGCTTGAGAATCAATTAGAGGCAGCACTTAAGAATATCAGAGCAACTAAGACTCAATTCATGGTCGATCAACTCGTTGATCTTCACAATCGGGAATCAGTACTTGTTGAAACAAATAATGCGCTTAGAAGTAAGTTGGAAGAAAATGATAAGTCGCAAATTCCAGATAGAATATTGGCTTTGGAAGTTGGTGGGTCTAATATCCACTAA 582 0.3866 MGRGRVELKRIENKINRQVTFAKRRNGILKKAYELSLLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYHKYNYCALETNQPANDTQNYQEYVRLKANVEILQRSQRNLLGEDIAQMNTNELEQLENQLEAALKNIRATKTQFMVDQLVDLHNRESVLVETNNALRSKLEENDKSQIPDRILALEVGGSNIH 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00874 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 177 - -
Car07g00874 193 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Car07g00874 193 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00874 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 177 - -
Car07g00874 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Car07g00874 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Car07g00874 193 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00874 193 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car07g00874 193 Coils Coil 116 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00874 Car-Chr7 7761994 7767195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00874 1 172 MADS-box Gene Family AT5G15800 67.241 9.09e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car07g00874 K-box 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00874 K09264 - gmx:100797819 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00249 03 5991166 5996406 Car07g00874 07 7761994 7767195 ECH
Car07g00874 07 7761994 7767195 Car07g00874 07 7761994 7767195 ECH