Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00873 atggggagaggaagagtgcagttgaagaggattgaaaacaagatcaatagacaagtcacgttttcaaagagaaggtctggtttgttgaagaaagcacatgagatctctgtgctttgtgatgctgaagttgctctcatcgttttctctactaaaggaaagctttttgagtactccagcgatccttgTATGGAAAGAATTCTCGAACGATATGAAAGATATTCGTATACGGAGAGGCAGCTTGTTAACAATGATCAGGCCCCAAATGAAAATTGGGTTCTAGAACATGCAAAACTCAAGGCTAGGATGGAAGTACTTCAGAGAAATCAAAGGAATTTTATGGGAGAGGATTTGGATGGCTTAAGTCTCAAAGAGCTTCAGAATTTGGAACAACAACTTGATTCTGCTCTCAAACACATTAGATCAAAGAAGAACCAAGTTATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCACTCCAGGAACATAACAACTTGCTTTCCAAGAAGATAAAAGAAAAAGAGAAGGAACTTGCTCAAGAGGAGCTGCAAAATAGTATGGAGGTGAATCCAATTGAAACTCAAACATTGGAATCCATGACTACTGGAGGGTCTCTAGAAGCAAAATGCAATGAAGAAAGTGCAGCACAAACTCGAGTTAGCGCCAGTATTCCAGCTTGGATGATTCGTCCTATAAATGAATAG 708 0.2839 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYTERQLVNNDQAPNENWVLEHAKLKARMEVLQRNQRNFMGEDLDGLSLKELQNLEQQLDSALKHIRSKKNQVMYESISELQKKDKALQEHNNLLSKKIKEKEKELAQEELQNSMEVNPIETQTLESMTTGGSLEAKCNEESAAQTRVSASIPAWMIRPINE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00873 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00873 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 - -
Car07g00873 235 Coils Coil 158 190 - -
Car07g00873 235 Coils Coil 88 108 - -
Car07g00873 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Car07g00873 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Car07g00873 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Car07g00873 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car07g00873 235 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car07g00873 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 187 - -
Car07g00873 235 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00873 Car-Chr7 7741718 7747057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00873 1 185 MADS-box Gene Family AT1G26310 67.380 5.49e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car07g00873 K-box 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00873 K09264 - gmx:100805348 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00279 02 2858834 2864145 Car07g00873 07 7741718 7747057 ECH
Car03g00250 03 6047954 6054421 Car07g00873 07 7741718 7747057 ECH
Car07g00873 07 7741718 7747057 Car07g00873 07 7741718 7747057 ECH
Car07g00873 07 7741718 7747057 Car01g01645 01 35800729 35816677 PCT