Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00863 ATGTCGAGTCCCGTGGCTTCCCCAAATAAACGCTTCAAATCAGAAGTAGAAGCTAACAAAGACGACGACGATGATAACCAAGATGATTGCTGCGGAATTTGCTATGTCGAACGCGGAGTTTCTATTCCGGGAGAGATCGATTCCTGCAACCACTATTTTTGCTTTGTTTGCATTATGGAATGGGCTAAGCACGAATCTCGATGCCCAATCTGTCGCCAGAGATTCTCCAACGTTCGTAGACTCCCTAAACATGGCCTCTTTTCTTCCTCTCGGGACGTTAAGGTCCCTCTCCGTGACCAGGTTTATCATCCTCATGGAAATATGACAAGTGGTCCTGTTGATTCTTATGCTGAACTCAAATGTTGTGTTTGCCATGTTGAGAAAGATGAAAATCTTATGCTAATTTGTGATCTTTGCGATACTGCTTCACATACATATTGTGTTGGCCTGGGCTACTCCGTTCCCGAAGGTGATTGGTTTTGTCATGATTGTGCTGTTTCCCGGGAGAATAATATTAACAAAGAGTTAGACCAACAAAATGTTGAGCAAACGGTGGACCCTGGTGTAACTATCTTAAATATTGTGAGAGGAACAAGCGGCCAGGTTGTTAGAAGACCGAAGGCATCTCCTATACGACAAAACTGTCCGTCTTCTTCTGTTATTCCTTTACTTGACAGGGTGAGTAGATCTGAAGGTAAAAAACCTGTGTCGGGAGTTCAGCTTGCGCAGCGTAATGTCCAGGTGCTTCGTGAAAATTGGAATTCTTTGAGAAGTGGTTCATTAAGGTTCCATAGCAAATCATTGCAAGCTGGTAGCACAAGTAGTGAAAAACAAGAATCTAGTTCTTTATCATGTGGCAAATTAGATGAATCACATTCAATGGCTTCCAAAGGTCTTCAACAATCATCAGTCCAAGGTGCTCAATCTACTATCGTGTTTAATAGTGGTGACTTGAAAGACGATACTCACAAAGCTTGGAAAATGATGGATAGGGCGAAGAGTATGCAAAGCACTCCTAGAAGAACTAGCAGAATTCCACAGGGAGTGGATGATAATCCCTTGTGTAGTGGGGCTAGAGAAATATCATTTGCTCCCCGTAGTTGCCTAGAATTGAAAAACCAACAGCCCAAAGCATTAGACTTCAGGTACACCAGAATGGAGAAGCAGTGTGACTATTCTAGTCTCAACAAAAATTTGGAAAATCATTGGTCTCCAATGTTGGGAGAGAAAAGACAAAGTAGGGTCACATGTGATGAGATGATACAACATTTGGGGGACCATACTACTCATTCATATGGATATAGGGAACATCCATTGCCCCAAAAGTTCCATACAAGTACCCACAGTGCTCCCTGTCATGATGAAAGAAATGCTGCGAAGGAACAAAGGCAGTCTGCTTGCTTGGTAACTTCGGCACCCTCTAGTGGCAAATCCGGCAGTGTGTTCATCTCTAATAAGGATGTGGATATTATCAATAAAGAAAAGAAGCTGGCCAAAAGCTTTGGGAATGGGATCACGAAAAATAATGAAGACGCTAAAACTGAGATCCAGTCTCTTGTTAAACTGAACCTGAAGTGCTTAACTAGAGATAAACAATTAGGTGTCAAAACCTTCAAGGTAGTTGCGAGGCGAGCCACCCATACAATCTTGGCTGCTTGCCATTCTGAGCAGCCAAAGTCTAATATTTACTCAAACTCAGTATGCAGCCATACTGATCATATTCTGCAGTTTCAGAAATCTAATTTAATGCCCAATTGTTGCCGACAATGCTTTAATGTCTTTGTAAACAATGTTGTCAAGTCCATCATGTTGGAAAAAGTCGGTAGCTGTTCTTGA 1836 0.4216 MSSPVASPNKRFKSEVEANKDDDDDNQDDCCGICYVERGVSIPGEIDSCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPKHGLFSSSRDVKVPLRDQVYHPHGNMTSGPVDSYAELKCCVCHVEKDENLMLICDLCDTASHTYCVGLGYSVPEGDWFCHDCAVSRENNINKELDQQNVEQTVDPGVTILNIVRGTSGQVVRRPKASPIRQNCPSSSVIPLLDRVSRSEGKKPVSGVQLAQRNVQVLRENWNSLRSGSLRFHSKSLQAGSTSSEKQESSSLSCGKLDESHSMASKGLQQSSVQGAQSTIVFNSGDLKDDTHKAWKMMDRAKSMQSTPRRTSRIPQGVDDNPLCSGAREISFAPRSCLELKNQQPKALDFRYTRMEKQCDYSSLNKNLENHWSPMLGEKRQSRVTCDEMIQHLGDHTTHSYGYREHPLPQKFHTSTHSAPCHDERNAAKEQRQSACLVTSAPSSGKSGSVFISNKDVDIINKEKKLAKSFGNGITKNNEDAKTEIQSLVKLNLKCLTRDKQLGVKTFKVVARRATHTILAACHSEQPKSNIYSNSVCSHTDHILQFQKSNLMPNCCRQCFNVFVNNVVKSIMLEKVGSCS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00863 611 Pfam Ring finger domain 30 72 IPR001841 -
Car07g00863 611 SMART ring_2 31 71 IPR001841 -
Car07g00863 611 SUPERFAMILY FYVE/PHD zinc finger 113 166 IPR011011 -
Car07g00863 611 MobiDBLite consensus disorder prediction 1 25 - -
Car07g00863 611 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Car07g00863 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 179 IPR013083 -
Car07g00863 611 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Car07g00863 611 Pfam PHD-finger 121 165 IPR019787 -
Car07g00863 611 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Car07g00863 611 SMART PHD_3 120 165 IPR001965 -
Car07g00863 611 MobiDBLite consensus disorder prediction 267 305 - -
Car07g00863 611 MobiDBLite consensus disorder prediction 330 352 - -
Car07g00863 611 PANTHER F18C1.6 PROTEIN 13 607 - -
Car07g00863 611 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 13 607 - -
Car07g00863 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 81 IPR013083 -
Car07g00863 611 SUPERFAMILY RING/U-box 22 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00863 Car-Chr7 7632402 7635524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00863 112 168 C2H2 Transcription Factor Family AT3G01460 37.931 2.29e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car07g00863 PHD 5.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00863 - - gmx:100808541 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00863 07 7632402 7635524 Car07g00863 07 7632402 7635524 ECH