Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00852 ATGGCGAACAAGAGCGTCAAGAAACCTCTTAGCCTCAACGATAGTCACTATCGCTTCCTTCAAGATTTATCTGCTCCTCCAAAACCCTCTTCCAAACCCATCGCTAATGATGAATACGAAACACCGATTCAACCCCGACGAAGCGTCGTTCCGCAAGATAACGATGATACTATTCCTCAGTTTTCTGCTATTACCGACTTCGATTCTCCAATCGGTCAAATTTCTCCGGAGAATAATCAACCTGTTAATGTAGAAGAAACTCTTATTCGCAACGAGGTTCCTCAGTTTTTCGATAATCGTGCTCGTAGCCAAATTTCTCCGGAGAATCGCCAACCAGATAATGTAGAAGAGGCTCCTTGTCGCAATGAAGTTCAACAGTTTTTTGATGATTGTTCACTTCGTCAAAATTTTCGAGGAAATCGTCAACCAGTTAAGGTAGAAGAAGCTTTTCTTCCCAACGAGGTTCCACAATTTTTGGATAATCATTCTCTTGGTGGAATTTTGGGAGATGAGATGGGTTTGGGGAAAACAATGCAGATTTGTGGATTTCTAGCTGGACTTTTTCATTCCCGTTTAATTACAAGGGCATTGGTTGTGGCCCCAAAAACACTATTGCCGCATTGGATCAAAGAGTTGGCCGTTGTTGGTCTATCTGAGATGACAAAAGAATATTTTGGAACTTGCGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACATATGATATTGTCCGCAACAATACCAAGTCCTTAAAGGGGTCCCGATATTTTGATGACGAGGAAAGTGAAGACGGCCCTACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTCTGCTGCCCCGAGTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTCCGTGGAAATGATAAAAATGCGTCTGACAGAGAGAAGCGCATTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTAG 1134 0.4198 MANKSVKKPLSLNDSHYRFLQDLSAPPKPSSKPIANDEYETPIQPRRSVVPQDNDDTIPQFSAITDFDSPIGQISPENNQPVNVEETLIRNEVPQFFDNRARSQISPENRQPDNVEEAPCRNEVQQFFDDCSLRQNFRGNRQPVKVEEAFLPNEVPQFLDNHSLGGILGDEMGLGKTMQICGFLAGLFHSRLITRALVVAPKTLLPHWIKELAVVGLSEMTKEYFGTCAKAREYELQYILQDKGVLLTTYDIVRNNTKSLKGSRYFDDEESEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRIGSSIAKELRDHIQP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00852 377 Gene3D - 149 377 IPR038718 -
Car07g00852 377 SMART ultradead3 146 340 IPR014001 -
Car07g00852 377 MobiDBLite consensus disorder prediction 18 55 - -
Car07g00852 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 377 IPR027417 -
Car07g00852 377 PANTHER SNF2/RAD54 FAMILY MEMBER 161 377 - -
Car07g00852 377 MobiDBLite consensus disorder prediction 350 377 - -
Car07g00852 377 Pfam SNF2-related domain 155 359 IPR000330 GO:0005524|GO:0140658
Car07g00852 377 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 332 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00852 Car-Chr7 7548694 7552349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00852 165 328 RAD5 or RAD16-like Gene Family AT1G02670 32.386 1.97e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car07g00852 SNF2_N 5.8e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00852 K20093 - gmx:100779283 386.726