Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car07g00783 | ATGACTTTTCCGGACAACATTCCAACCTTTAGGATGTCACCGCCGCATTTCGCCACAAACAGTGATGTCATTGAAGTGAGGCCTCAATTCCCAATGAACAATCAACACTTTGATCAACCCCCTTCATTCAAAAGGGCAAGAATTTCTGACAACAATCATCCTCCAAGGATGATGGTTCAGCCTCCATCAAACAAAGGAACAAGCCACATTTTCTTCAAGACTCGAATTTGTGTTAAGTTCAAGCTTGGTAGTTGTAGAAACGGTGAAAATTGTAACTTTGCTCATGGGGTTGAAGACATAAGGAAGCCACCACCAAATTGGCAGGAGCTGGTTGGTTCGCGCAACGACGAACAGCTGCATGCGTTGGTGGCGGGGAATTGGGATGATGATCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTTTTATAATGGTGAGGAATGTCCTTATGGTGATAAGTGTAATTTTCTTCATGAGGATCCTGCAAAGTTTAGGGATGATTCTAGGAATTCAAGAGAGAGTACTACAATAAGCATTGGGACTAATGGTTCCCCTAAGTCATATGGGGATGGTACTAATAATTTGGATGGGAATAGGGCTGTCAACAAGCAAACAAAGGGAACTTATTGGAAGACTAAACTGTGTCTCAAGTGGGAACATACTGGGCACTGTCCCTTTGGAGATGATTGTCACTTTGCTCATGGACTTGAAGAGTTACAAGCTTTTGGTGGGCGCGTCGAAGCTGAAATTGCGGGTGCCGTAGCAAATTCAACAAAAGCTATCATCATTCCAACATCAGTTTCTGCCATTGATGCACCACCTACTACCTTAATAGCAAGTCAACCTGTGGCAAAGGAAGAGGAGCAGACTAAGAAGCATTTACTTCGGTTGAAAGTGAACAAGAAGATCAATCGTATTTATGGTGATTGGATCGATGATTTACCGCTTGTTCTTCACAACTTACCAAGTACTGTGGAGACCTGA | 987 | 0.4286 | MTFPDNIPTFRMSPPHFATNSDVIEVRPQFPMNNQHFDQPPSFKRARISDNNHPPRMMVQPPSNKGTSHIFFKTRICVKFKLGSCRNGENCNFAHGVEDIRKPPPNWQELVGSRNDEQLHALVAGNWDDDQKIIHKMKLCKKFYNGEECPYGDKCNFLHEDPAKFRDDSRNSRESTTISIGTNGSPKSYGDGTNNLDGNRAVNKQTKGTYWKTKLCLKWEHTGHCPFGDDCHFAHGLEELQAFGGRVEAEIAGAVANSTKAIIIPTSVSAIDAPPTTLIASQPVAKEEEQTKKHLLRLKVNKKINRIYGDWIDDLPLVLHNLPSTVET | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car07g00783 | 328 | Pfam | CCCH-type zinc finger | 138 | 159 | IPR041367 | - | |
Car07g00783 | 328 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 1 | 317 | IPR045877 | GO:0003729 | |
Car07g00783 | 328 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 | 1 | 317 | - | - | |
Car07g00783 | 328 | Gene3D | - | 203 | 242 | - | - | |
Car07g00783 | 328 | Gene3D | - | 131 | 163 | - | - | |
Car07g00783 | 328 | Gene3D | - | 64 | 102 | - | - | |
Car07g00783 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 210 | 238 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | SUPERFAMILY | CCCH zinc finger | 69 | 102 | IPR036855 | GO:0046872 | |
Car07g00783 | 328 | SUPERFAMILY | CCCH zinc finger | 134 | 161 | IPR036855 | GO:0046872 | |
Car07g00783 | 328 | SUPERFAMILY | CCCH zinc finger | 209 | 241 | IPR036855 | GO:0046872 | |
Car07g00783 | 328 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 72 | 96 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 211 | 236 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | MobiDBLite | consensus disorder prediction | 174 | 200 | - | - | |
Car07g00783 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 71 | 98 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | MobiDBLite | consensus disorder prediction | 166 | 200 | - | - | |
Car07g00783 | 328 | SMART | c3hfinal6 | 210 | 237 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | SMART | c3hfinal6 | 134 | 161 | IPR000571 | GO:0046872 | |
Car07g00783 | 328 | SMART | c3hfinal6 | 71 | 97 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car07g00783 | Car-Chr7 | 6921074 | 6924735 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car07g00783 | 212 | 241 | C3H Transcription Factor Family | AT1G68200 | 63.333 | 2.92e-08 | 52.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Car07g00783 | zf-CCCH | 4.5e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car07g00783 | - | - | aprc:113846184 | 476.863 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car07g00783 | 07 | 6921074 | 6924735 | Car07g00783 | 07 | 6921074 | 6924735 | ECH |