Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00783 ATGACTTTTCCGGACAACATTCCAACCTTTAGGATGTCACCGCCGCATTTCGCCACAAACAGTGATGTCATTGAAGTGAGGCCTCAATTCCCAATGAACAATCAACACTTTGATCAACCCCCTTCATTCAAAAGGGCAAGAATTTCTGACAACAATCATCCTCCAAGGATGATGGTTCAGCCTCCATCAAACAAAGGAACAAGCCACATTTTCTTCAAGACTCGAATTTGTGTTAAGTTCAAGCTTGGTAGTTGTAGAAACGGTGAAAATTGTAACTTTGCTCATGGGGTTGAAGACATAAGGAAGCCACCACCAAATTGGCAGGAGCTGGTTGGTTCGCGCAACGACGAACAGCTGCATGCGTTGGTGGCGGGGAATTGGGATGATGATCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTTTTATAATGGTGAGGAATGTCCTTATGGTGATAAGTGTAATTTTCTTCATGAGGATCCTGCAAAGTTTAGGGATGATTCTAGGAATTCAAGAGAGAGTACTACAATAAGCATTGGGACTAATGGTTCCCCTAAGTCATATGGGGATGGTACTAATAATTTGGATGGGAATAGGGCTGTCAACAAGCAAACAAAGGGAACTTATTGGAAGACTAAACTGTGTCTCAAGTGGGAACATACTGGGCACTGTCCCTTTGGAGATGATTGTCACTTTGCTCATGGACTTGAAGAGTTACAAGCTTTTGGTGGGCGCGTCGAAGCTGAAATTGCGGGTGCCGTAGCAAATTCAACAAAAGCTATCATCATTCCAACATCAGTTTCTGCCATTGATGCACCACCTACTACCTTAATAGCAAGTCAACCTGTGGCAAAGGAAGAGGAGCAGACTAAGAAGCATTTACTTCGGTTGAAAGTGAACAAGAAGATCAATCGTATTTATGGTGATTGGATCGATGATTTACCGCTTGTTCTTCACAACTTACCAAGTACTGTGGAGACCTGA 987 0.4286 MTFPDNIPTFRMSPPHFATNSDVIEVRPQFPMNNQHFDQPPSFKRARISDNNHPPRMMVQPPSNKGTSHIFFKTRICVKFKLGSCRNGENCNFAHGVEDIRKPPPNWQELVGSRNDEQLHALVAGNWDDDQKIIHKMKLCKKFYNGEECPYGDKCNFLHEDPAKFRDDSRNSRESTTISIGTNGSPKSYGDGTNNLDGNRAVNKQTKGTYWKTKLCLKWEHTGHCPFGDDCHFAHGLEELQAFGGRVEAEIAGAVANSTKAIIIPTSVSAIDAPPTTLIASQPVAKEEEQTKKHLLRLKVNKKINRIYGDWIDDLPLVLHNLPSTVET 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00783 328 Pfam CCCH-type zinc finger 138 159 IPR041367 -
Car07g00783 328 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 317 IPR045877 GO:0003729
Car07g00783 328 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 317 - -
Car07g00783 328 Gene3D - 203 242 - -
Car07g00783 328 Gene3D - 131 163 - -
Car07g00783 328 Gene3D - 64 102 - -
Car07g00783 328 ProSiteProfiles Zinc finger C3H1-type profile. 210 238 IPR000571 GO:0046872
Car07g00783 328 SUPERFAMILY CCCH zinc finger 69 102 IPR036855 GO:0046872
Car07g00783 328 SUPERFAMILY CCCH zinc finger 134 161 IPR036855 GO:0046872
Car07g00783 328 SUPERFAMILY CCCH zinc finger 209 241 IPR036855 GO:0046872
Car07g00783 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 96 IPR000571 GO:0046872
Car07g00783 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 211 236 IPR000571 GO:0046872
Car07g00783 328 MobiDBLite consensus disorder prediction 174 200 - -
Car07g00783 328 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Car07g00783 328 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Car07g00783 328 MobiDBLite consensus disorder prediction 166 200 - -
Car07g00783 328 SMART c3hfinal6 210 237 IPR000571 GO:0046872
Car07g00783 328 SMART c3hfinal6 134 161 IPR000571 GO:0046872
Car07g00783 328 SMART c3hfinal6 71 97 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00783 Car-Chr7 6921074 6924735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00783 212 241 C3H Transcription Factor Family AT1G68200 63.333 2.92e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g00783 zf-CCCH 4.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00783 - - aprc:113846184 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00783 07 6921074 6924735 Car07g00783 07 6921074 6924735 ECH