LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g00780	ATGGACGAAGATTTGCTCAAGCGTAACACCGATTGCGTTTATTTCTTAGCTTCACCCCTCACTTGCAAGAAGGGGGCTGAGTGTGAGTATAGGCATCATGAGATTGCGAGGCTTAACCCGAGGGATTGCTGGTTTTGGTTAGCGGGAAATTGTCTTAATCCAACTTGTGCTTTTAGACACCCTCCATTGGATGGGCACACTGGAGTGCCATCTGAACCTTTGCAATCTTCAGTACCTGCAAACAAGACAACGGTTCCTTGTTTTTATTTCTTCAATGGGTTTTGCAACAAAGGCAACAGATGCTCATTTTTGCATGGGCCTAGTGATAGCTTGCTCACTGTAAAGCCTTTGAAGAATGACAATGGAAGCAGTAAGGCACTCAACTCAGAAAATAAAACTTCATCGGGAAATATAACATGTGTAGCGTCAGCACCAAGTGAAACACATTTTGACCGATCTTTATCTGTTCCAAAAGCTTTGTCTGATTTTAAActtcagccaaaggaagttcttcaggtaccattacctgaaaatgttaaacagaaaGGTGATTGCTTGGAATTATCTGCCTCTGACTACAAAGAAACTGCTATGACTCGGTCAAACTCTCTGTTACCAGATGATGGCGTTGCTCATAACATGTCTCATTTAAGCACTGAGCAGAGTTCAGATGAGCAAATAAATAGTCATGTAGAGCCTGAGGAGCGGTGGGAATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACTTGGGTTATGAGGATGATTCTGAATATTTACCAGTGCTTGATATGAATGAACAGGAACTGAATGAGCAATACTCGGGGTATGAATTTAAAGATACAGTTGAGTATGATACTCTGTGCTCAGACACTGATATTCTATATGAACAGGGAACATGTGATGATTACAGATGTTTCGATAGTGATTTTACTAATGCTAATGGAAGAAAAGTTTGTGGTTATTCCAGAGAGATGGTTGTAGATTCTATATTTTCCAGGAAAAGGATACGGATGTCAGCCGCTGAGATGTCTGATTGCGACTCTGACTTAGATCTACGCGACCATCTGAGGAGACGAAGGGAGGGCAATGTTCCTCCTGTCACAGGCTTCTTAAGAAGACATGACTTGCCTTCTTTGATGGTTCGAAACTCAGTAAGGCATCAAAGACAAGGCACTGGTCAGCGGCAAAATAGAAGATTAACATCACAATTAGAATTTAGTTCGATGAGAGAGGTTGAAACTCTATCAATTGCCAACAAGGAAAGGTTTAGGCCTTTCCAGCAAAATAGGCCAAGAAAGCATTATGGAGAAAATCTAGATAATCGGCCATTTCTTTCTTCTATGGTATCCAGGAAACCAGTTGTGAAGCAACAGAGATTTATTCAGGAATCCACTACATTTTCAGGGCCCAAGACTCTTGCagaaataaaagaagagaagaagaagaagaagaagGTTGGTGAAAGTTCGCACCGTGAAAGCATATCAGCTGGTTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAGAAGAACCATCGGTTGA	1563	0.396	MDEDLLKRNTDCVYFLASPLTCKKGAECEYRHHEIARLNPRDCWFWLAGNCLNPTCAFRHPPLDGHTGVPSEPLQSSVPANKTTVPCFYFFNGFCNKGNRCSFLHGPSDSLLTVKPLKNDNGSSKALNSENKTSSGNITCVASAPSETHFDRSLSVPKALSDFKLQPKEVLQVPLPENVKQKGDCLELSASDYKETAMTRSNSLLPDDGVAHNMSHLSTEQSSDEQINSHVEPEERWESSPGFDVLVHDESGNLGYEDDSEYLPVLDMNEQELNEQYSGYEFKDTVEYDTLCSDTDILYEQGTCDDYRCFDSDFTNANGRKVCGYSREMVVDSIFSRKRIRMSAAEMSDCDSDLDLRDHLRRRREGNVPPVTGFLRRHDLPSLMVRNSVRHQRQGTGQRQNRRLTSQLEFSSMREVETLSIANKERFRPFQQNRPRKHYGENLDNRPFLSSMVSRKPVVKQQRFIQESTTFSGPKTLAEIKEEKKKKKKVGESSHRESISAGFQDPKPLSEILKDRRTIG	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g00780	520	MobiDBLite	consensus disorder prediction	211	226	-	-
	Car07g00780	520	Pfam	Zinc-finger containing family	7	63	IPR041686	-
	Car07g00780	520	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	517	-	-
	Car07g00780	520	ProSiteProfiles	Zinc finger C3H1-type profile.	37	63	IPR000571	GO:0046872
	Car07g00780	520	MobiDBLite	consensus disorder prediction	477	495	-	-
	Car07g00780	520	ProSiteProfiles	Zinc finger C3H1-type profile.	6	35	IPR000571	GO:0046872
	Car07g00780	520	SUPERFAMILY	CCCH zinc finger	81	106	IPR036855	GO:0046872
	Car07g00780	520	ProSiteProfiles	Zinc finger C3H1-type profile.	81	108	IPR000571	GO:0046872
	Car07g00780	520	MobiDBLite	consensus disorder prediction	227	241	-	-
	Car07g00780	520	SMART	c3hfinal6	39	62	IPR000571	GO:0046872
	Car07g00780	520	SMART	c3hfinal6	81	107	IPR000571	GO:0046872
	Car07g00780	520	SMART	c3hfinal6	7	34	IPR000571	GO:0046872
	Car07g00780	520	Gene3D	-	3	63	-	-
	Car07g00780	520	Gene3D	-	74	150	-	-
	Car07g00780	520	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE	1	517	-	-
	Car07g00780	520	MobiDBLite	consensus disorder prediction	211	241	-	-
	Car07g00780	520	Pfam	RNA-binding, Nab2-type zinc finger	86	106	-	-
	Car07g00780	520	MobiDBLite	consensus disorder prediction	470	520	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Car07g00780		zf-CCCH_3	2.2e-11	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g00780	-		-	aprc:113847503	728.013

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car07g00780	07	6904500	6907801	Car07g00780	07	6904500	6907801	ECH