Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00680 ATGCTTTTTGGAGAGGTCGTACTCTACACATCAAACAGTACGAGTGACTTGTTTTCATCATCCCGCGTGTGGACGAGCTTGTCTTTGCAATCCAACCCGGAATGGTTGATGGAGGAGTTTGAGTCTCATATTGATTGGGTGTGCAACACAACTCCCATCTATGTGTATTGTGTGGTCTGTGGAGAATGGGAAATAAAAACATTGGATTCACAAACTTATACCCTCAAAGTGGATAAGCAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCCGAACAGCAGCGTTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTCTTGTCTGCCTACCATGTTGAAGATGGTCACACATTGCATCTGGTTGTGAGGCAACCTGATCTACCACCTCCAGGAAGTCTGCCCTATCATGCAGTGACTGAGCCAAATTCAAGCACAAGTCATGGTCACAGTACTCAAGTTGCTCCAGGTGTATTTGTTGAAACTTTCAATGTTCCTGTTCAGGGAGATGGAGTTCCGCCTGAAATAAATAGGATTGTTTCTGCTGTTCTAGGCTCTATTGCTGGACTTCCAAATTTTGTAACTGGTGGTGAAGGGATTGTTGTCAGGGAGCAGGATTCCCAAGGCCTTGGAAGAGCTTCAGATTCTAGTGGAATATCAGATTCGTTACAGAGTTTGTCGGATAGATTGCGGAATACTTTTGGACTTCCAGCATCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACGACTTTGTCTCAGTACCTAAGTCATATGAGCCGTGAATTTGATACAATTGTCAGAGAAGGGGGGAATAATGCCCAAGTAGCTGAGGCTCATAGTAATGAAGAAAGGGGATCTGTTTCTTCGCGTTTGGGTTCAACACCAGAAAGTCTTTCATCACCTGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGGATGATCATTGAACAAGCTGGGGAGTGTATACTTCAACTGGCAAGACAACTGGAGAATCAAGCAGATGTAACTGATGCCCCATCGCGGTCAAGCATTCAATCTAGGGCTTTGAGGACTGGAGTATTATTCTATAATCTTGGTGCACTTTTACTTGAGCTTGGTCGCACAACCATGACATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTTGTTAATGGTGGACCTGCAGTTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCTAGTTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAAGTTTAGGTAGTGGACTTGGCTCAAGTTTTTTCCCAAGGCGTATCGATATACAGATAAGACGCGGCACATCAACAACTGCACCCAATGCCAATCAAGAAGAGCGCGGGGATACACAATCTCCTTCAGTACAAAGAAATCCAGTTGAGAGTTCTGCTAGTCAAGCAACCTCTAGGCGTCCAGATGCATCTATTGCTGGAGAGTCAGGAGTAAGGATATTGCCGATTAGAACCATGGTTGCAGCAGTACCTGTTCCATTGGGCCGTCCTTCTTCAGAACCATCCGGTAATCCTGCAGGGCTTTTCCATCCTGTTGTTGGGAGATTTCACCGTGTAGGTGTAAGTTCAGGGCAGGCAAATAGTGAACAGAGATCTCAATCAGCAAGTCAGCATCATGCGGCACAACATTCAACTCCTGAATCCACATTGCAAAGGCAAAATGTAGAAGACTCTGCAAGGAATGTTTGTCATTGGACTTCTGTAGGGACCTCATCAAGTCCAAACACGAGACAAGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTGTCAGCTGGGGGACCCCAAAACACCCAAGAATCTGATAGACAGGTACCTAGCAAAATTCACGTGGAAGATTCAAGCTTACAAGGAGCAAATGGGGGTTCCACCTCAGTGCATGCTGCAACATCAACAGGTGCTCCCCAGGTCCCTGAAGCTGAACCCCCTGTTAGTGATGAAGGAGTGTTTTTGTCTAATGTACTCCGCGAGATCATGCCAGTCATATCTCAACGAGTAGGGTCTGAGAGAAATCCTTCTGAAGATCAAATGGCTCAAGATTTGTCGACCCAGGTTGAAACTAATGCTGGGACATCACGCAGACACAGTGGTTCTGAGCCAAGCCCTCCGGATCCAAAACGCCAAAAGATGGAATGA 2232 0.4565 MLFGEVVLYTSNSTSDLFSSSRVWTSLSLQSNPEWLMEEFESHIDWVCNTTPIYVYCVVCGEWEIKTLDSQTYTLKVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPYHAVTEPNSSTSHGHSTQVAPGVFVETFNVPVQGDGVPPEINRIVSAVLGSIAGLPNFVTGGEGIVVREQDSQGLGRASDSSGISDSLQSLSDRLRNTFGLPASVSLGSLQPPVIPDSLTTLSQYLSHMSREFDTIVREGGNNAQVAEAHSNEERGSVSSRLGSTPESLSSPASLAEVLLSTRRMIIEQAGECILQLARQLENQADVTDAPSRSSIQSRALRTGVLFYNLGALLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSSLGSGLGSSFFPRRIDIQIRRGTSTTAPNANQEERGDTQSPSVQRNPVESSASQATSRRPDASIAGESGVRILPIRTMVAAVPVPLGRPSSEPSGNPAGLFHPVVGRFHRVGVSSGQANSEQRSQSASQHHAAQHSTPESTLQRQNVEDSARNVCHWTSVGTSSSPNTRQEPSNSRVVNINILSAGGPQNTQESDRQVPSKIHVEDSSLQGANGGSTSVHAATSTGAPQVPEAEPPVSDEGVFLSNVLREIMPVISQRVGSERNPSEDQMAQDLSTQVETNAGTSRRHSGSEPSPPDPKRQKME 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00680 743 MobiDBLite consensus disorder prediction 462 500 - -
Car07g00680 743 ProSiteProfiles Ubiquitin domain profile. 65 136 IPR000626 GO:0005515
Car07g00680 743 MobiDBLite consensus disorder prediction 695 743 - -
Car07g00680 743 MobiDBLite consensus disorder prediction 646 664 - -
Car07g00680 743 MobiDBLite consensus disorder prediction 552 588 - -
Car07g00680 743 CDD Ubl_ubiquitin_like 65 130 - -
Car07g00680 743 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 62 743 - -
Car07g00680 743 PRINTS Ubiquitin signature 92 112 IPR019956 -
Car07g00680 743 PRINTS Ubiquitin signature 71 91 IPR019956 -
Car07g00680 743 PRINTS Ubiquitin signature 113 134 IPR019956 -
Car07g00680 743 SMART ubq_7 61 132 IPR000626 GO:0005515
Car07g00680 743 MobiDBLite consensus disorder prediction 698 730 - -
Car07g00680 743 Gene3D - 64 139 - -
Car07g00680 743 Pfam Ubiquitin family 65 133 IPR000626 GO:0005515
Car07g00680 743 MobiDBLite consensus disorder prediction 291 312 - -
Car07g00680 743 SUPERFAMILY Ubiquitin-like 64 135 IPR029071 -
Car07g00680 743 MobiDBLite consensus disorder prediction 646 677 - -
Car07g00680 743 MobiDBLite consensus disorder prediction 462 507 - -
Car07g00680 743 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 62 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00680 Car-Chr7 5948298 5961548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00680 65 132 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.706 3.50e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00680 K23390 - gmx:100783070 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00680 07 5948298 5961548 Car07g00680 07 5948298 5961548 ECH