Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00679 ATGGCTGAACAGACTGAGAAGGCTTTTCTGAAGCAACCTAAAGTGTTTCTATGCTCAAAGAAATCTGGAAAGGGTAAGAGGCCTGGAAAAGGTGGAAACCGCTTCTGGAAATCTATTGGTCTTGGGTTTAAGACTCCCAGAGAAGCAACCGAAGGAACCTACATTGACAAGAAGTGTCCATTCACTGGAAATGTTTCCATCCGAGGTCGTATCTTAGCTGGCACTTGTCATAGTGCTAAAATGAATCGTACAATTATTGTTAGGAGGAATTATCTTCATTTCATCAAGAAGTATCAGAGATATGAGAAAAGACACTCAAACATTCCCGCTCATGTATCACCTTGCTTCCGTGTTAAAGAAGGAGATCATGTTACTATTGGCCAATGCAGGCCCCTCTCCAAGACAGTGAGGTTCAATGTGTTGAAGGTGATCCCAGCTGGTTCATCCAGTGGTGTTGCCAAGAAGGCTTTTACCGGAATTTGA 483 0.4306 MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIPAGSSSGVAKKAFTGI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00679 160 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Car07g00679 160 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Car07g00679 160 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Car07g00679 160 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Car07g00679 160 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 160 - -
Car07g00679 160 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Car07g00679 160 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Car07g00679 160 Gene3D - 1 158 - -
Car07g00679 160 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Car07g00679 160 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 160 IPR000266 GO:0003735|GO:0005840|GO:0006412
Car07g00679 160 TIGRFAM uS17_arch: ribosomal protein uS17 53 143 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00679 Car-Chr7 5943357 5945591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00679 1 160 Cytoplasmic Ribosomal Protein Gene Family AT3G48930 90.000 1.16e-96 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00679 K02949 - gmx:100500186 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00679 07 5943357 5945591 Car07g00679 07 5943357 5945591 ECH