Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00670 ATGGCTTATGAGGAGAATATTGAAGAGGAAATAGGTTACCAGCGTTTCACGGAAGAAGAAGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGTGAAAAGAATTGCGAAACGGAAGAATTAAGGGAATATAAAACAGAAATATTAGGACATCCACTTTACGATCAACTATTGTCTGCACATGTTTCGTGTCTTAGAATTGCAACACCTGTTGACCAGCTTCCAAGGATTGATGCTCAGCTTCAACACTCACAACGTGTTCTTCAAAAATACTCTTCTCTCAGGATTTCTAATCGCCTCATCGATCCCAAGGACCTTGATCACTTTATGACGCATTATGTTCTTTTGCTATGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTTGAGCAGTCTCTGCAAACCTTGACAGGTGTATCTTCAGGGGAAGGAACAGGAGCAACAATGTCGGACGATGAAGAGGAGCAAGCAGAGAGTAATGCCAAGTTATTATATGAAAGTGGAAGCCTTGATGGAGTTGATACACTTGGGTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGGTCTTTGATGGAGCGAGTTAGGCTTGAGTTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGATTGTAGATGTAAGAGAGGAAATTCTACGAAAGAGAAGAGCAGGGAAACTCCCAGGGGACACCACTTCTCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGATTAGTGCAGGAAACAGGGTTGCAATTAAAACAGATAAACAATTGGTTTATAAATCAAAGGAAAAGGAATTGGCACGCTAACTCTCCATCATCTACCAACTCCAAAACCAAGCGCAAGAGTGCAGGTGAAAGCAGTAACCAGAGTTTCATGTGA 957 0.4127 MAYEENIEEEIGYQRFTEEEEXXXXXXXXXXRSEKNCETEELREYKTEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQHSQRVLQKYSSLRISNRLIDPKDLDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQTLTGVSSGEGTGATMSDDEEEQAESNAKLLYESGSLDGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSTNSKTKRKSAGESSNQSFM 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00670 318 MobiDBLite consensus disorder prediction 291 318 - -
Car07g00670 318 SMART ELK_2 211 232 IPR005539 GO:0003677
Car07g00670 318 Coils Coil 16 21 - -
Car07g00670 318 SUPERFAMILY Homeodomain-like 233 298 IPR009057 -
Car07g00670 318 Pfam KNOX1 domain 45 86 IPR005540 GO:0003677|GO:0005634
Car07g00670 318 Pfam KNOX2 domain 105 151 IPR005541 GO:0003677|GO:0005634
Car07g00670 318 SMART KNOX2_2 96 152 IPR005541 GO:0003677|GO:0005634
Car07g00670 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 312 - -
Car07g00670 318 SMART KNOX1_2 43 87 IPR005540 GO:0003677|GO:0005634
Car07g00670 318 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 30 312 - -
Car07g00670 318 Coils Coil 32 48 - -
Car07g00670 318 Gene3D - 232 293 - -
Car07g00670 318 Pfam ELK domain 211 232 IPR005539 GO:0003677
Car07g00670 318 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Car07g00670 318 SMART HOX_1 233 298 IPR001356 GO:0003677
Car07g00670 318 CDD homeodomain 234 293 IPR001356 GO:0003677
Car07g00670 318 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Car07g00670 318 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00670 Car-Chr7 5878495 5883683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00670 45 315 Homeobox Transcription Factor Family AT5G11060 80.292 3.10e-159 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car07g00670 KNOX2 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00670 - - gmx:100803673 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00670 07 5878495 5883683 Car07g00670 07 5878495 5883683 ECH
Car07g00670 07 5878495 5883683 Car01g01460 01 24781986 24788851 PCT