Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00663 ATGCCGGATGGAGAATCCTCCACCGCCGGTACCCTGCCGCCGGAGAGCTCTGTTGTTGTTTCCGATTATGAAAGTCTTTCCCAAGTCAAAATTCACGACGACACTGTCAAAAAAGACCCCAAAAAAATTGCAAGAAAGTATCAATTGGAGTTATGCAAAAAAGCTATGGAAGAAAATATAATTGTTTATTTGGGAACAGGATGTGGGAAGACACACATTGCTGTGCTACTCATTCATGAAATGGGTCATTTGATAAGGAAGCCTAAGAAGGACCTATGCGTCTTTCTTGCACCTACCGTTGCTTTAGTTCATCAGCAAGCTAAGGTAATAGGCGATTCTACTGATTTTAAAGTTGGGATTTACTGCGGGAGTTCAAAGCGCTCGAAATGTCATGAACATTGGGAGCAGGAGATTGACCAGTACGAGGTTCTTGTTATGACCCCACAAATATTACTCCATAACTTATCTCATTGTTTCATCAAGATGGAGATGATTGCACTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAGTCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAATTCCGAAAAAGTTCCCCGAATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTACTGCCGCAAATCTACCAAAAAGCATCAATAGTCTTGAACAAATGCTTGATGCTAAGGTATACTCGGTTGAAGACAAGGCATTGCAATCTTTTGTGACCACTCCTGTAGTTAATATATATCATTATGGTTCGACTGCAAATATGGACACTAGCTTGTGCTCGAGTATTGAGGAGATTAAATGTCAGAGCATAGAAAACCTTAGTAGGAACATAGAAGATCACCATAAACGGATGAACACAAAGAAACTTTTGAACCGAGTGCATGATAATGTGATCTTCTGTCTGCAGAATCTTGGTATTTGGGGAGCATTGCAGGCTAGTCATATTCTTTTGGGCGGTGATCATTCTGAGAGGCATGCATTAGTTGAGGCAGAAGGAAATTCAAGTGACGAGTCTGCATGTGATAAATATCTTGCCAAGGCAGCTGAACTATTTGCTTCCAAATGCATGGCAGGTGACGGTGTATCTGATCCATCTTCAGTGGAAATATTAAAAGAGCCCTTTTTCTCAGCAAAATTATTACGCCTCATTGGGATACTGACCAGTTTCAGGTTGCAACAAAACATGAAATGCATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCTTGTCATACATACTACAGAGGCTCAAGCTTCTAAGACAATGGAAGAGTGACTTTCTTGTAGGAGTACATTCTGGAGTGAAGAGTATGTCACGGAAGACCATGAACATCATTGTTGAGAAGTTTCGTTCTGGAGAGTTGAATTTACTGATTGCCACCAAAGTGGGTGAAGAAGGACTTGATATTCAAACATGTTGTCTTGTCATACGGTTCGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCGCGTATGCTTCGCTCGGAATATGCATTTCTGGTTGACAGTAACAATGAGAAGGAATTAGAAATAATTGGTGGTTTCAAGAACGATGAATTCCGAATGAACACAGAAATTACTGTCCGAACATCCAATGAGACATACAAAACCCCCGTGGAAAGAATATTCAAAGTTGATTCATCTGGTGCCTCAGTCAGTTCGGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACACGACGAGTTCTTTGATCCAAAGCCAAATTTCTTTTACTTTGATGATTTAGGAGGAGTTGTCTGCCAAATAACATTGCCATCCAATGCTCCGATACATCAAATTGTTAGTACACCACAGTTGTCTATGGAAGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAAATAGGTGCTTTGAATGATTGTCTCTTGCCAAAGCAAAATGATGCAGAGCCAGAGAAGGTTTTGGACTCTTCTAATTCAGATGAATGTGAAGATGATATTTCAAGAGGAGAATTATATGAGATACGAGTTCCTTCTGCCTTTGGACAGTCATGGAAAAATGAGGAGAAAACTGTCCATCTCAACTCTTACTACATTAAATTTTACCCTACTCCAGAGGACAGGGTCTATAAAAAGTTTGGTTTATTCATCATGACTCGTCTTCCAATGGAGGCAGAGAAACTGGAACTTGATCTTCATCTTGCTCACGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTTCAGAATTCAACAAAGATGAGATTAAGATGGCGGAAAACTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGACTAAAATTTGTTTCTAAGTTTGTAGAATTGGGTGACAAATCTAATTCGCCATCCAATTCTACCTTCTACCTTTTGCTTCCAGTCATATTGGAAGTATATGATGATGCAATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGAATCTAGAAACTACTTCAGATAAAAAGGTTACCTCTTTGGATATTCATCTGCAACTTGCCAATGATTACAAAAGTGTGAAAGATGTTGAGAATAGTTTAGTGTATGTTCCGCATACGAAGCTCTTCTTTTTTGTCACAAATGTTATCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAGGCACTTCAAGCTACGCAGACCACTTAATGGAAAAGTTTTCCATTCCTCTCAAATACCCTGAACAACCACTTCTGCATGCAAAACCACTCTTCAATCTGCACAACCTGCTACACAATCGAAACCACGAGCATGCTGAACCAAATGAGCTTGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTAAAGGTAGTAGGATTTTCAAAGGATATTGGTAGCTCCATATCTTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCGATTGAACTGAAGCACCAGCTATCTTCCTCCTTCCCTGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAGAAGTGTCAGGAGCGCTTTTCCCTTGAGAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCACGCCATTTTTTCCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACTAGTAAGCGTTCCAGTGTTGTAAACAATTCCAATTTGTTCAAATTGGCTATTAGGCGCAATTTGCAGGTTTATATATGTGATCAGGTATTTGATCCCCTCCAGTTCTATGCATTAGGCCGTCCTTGCCCTAGAGTTTGTACCGAGGAAACTGAAGACAGCATACACTTATGTTTAAACTCTGATGGGAAGAAAAGAAGTGCAACTAGTACCCGATGTAATAAAAATCACCATTGGTTGCATAGGAAAACCGTTGCTGATGTTGTTGAAGCTCTGGTGGGGGCATTCATAGTCGACAGTGGCTTTAAAGCCGCAACTGTCTTTCTTACATGGATCGGCATACAAGTAAATTTTGAAGCCTCGCAAGTTGTTAATATTTGCACCGGAAGTGTTGGCTATTTTCCTCTTTCTGCTGATGTAGACATTCCTTCCCTTGAAGAAAAGTTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTACAGGCATTTGTACATCCTTCTTATAACAAGCACGGAGGTGGCTGTTATCAGAGATTAGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACGTCATATCTATACTCAGCTTATCCCAAACTGAAGCCCGGACAACTGACGGATCTGAGATCGTTATCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTAGATCGCTGTTTTGATGAATTTCTTTTATGCGATTCAACTCCTCTGACCGAGGCGATAATAAAGTATGTGGACCATATGAGAAGATCGGTATCACATTGTGGCACTAGTGGAGGGCCAAAAAGTCCCAAGGCCCTAGGTGATTTGGTGGAATCTTGTGTTGGTGCAGTTCTTCTTGATTCAGGATTTGATTTGAATAAAGTTTGGGAGATTATGACTTCGTTCTTGGACCCAATCATGAAATTTTCATCAAGTTTGCAGCTTAGTCCTATTAGGGATTTGCAAGAACTTTGCCAATGTCATAATTTGGAGTTGCAGCTTCTGACATCAAAACAAGCAAAAACTTTTTCAGTTGAAGCCAAAGTGATTGGGAACGATGTATGTGAAAAAGCTTTTGTGACAGGGCAAAATAAAAAAGATGCTACTAGAATTGCTTCACAGCTACTATTTTCAAATTTGAAGGCTCAAGGGTTGAAGCCAAAGACAAAAACTTTGGAAGAAGTTCTGAAATCAACATTTAAGAAAAAACCAAAACTCATTGGCTATGATGAAACTCCCATTGATGTGACGGATGCTACTACCATCGGACAGTTAATGGCTAACGGTGACCTATGCAACAAGTCTAACCCAGAAATCCGCCCTATCCAGGAGGTAGCCGATGAAAGCGCCTCATGTGTGAAACCTGTCGGCCAACAGCTTCAATCTTTTCCCAAGGAAAAGCTCCAAGAAACCTCTCGAAAGCGTGATTGTGCTAGTGACTCGTCAAAAACAGGAACAGCAAGATCGCGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTAAATTTGAATGCTGCAAGGAAGAGGGACCAGACCATCTTAAGTTATTCACATTCAAGGCAACAATGGAGATAGAAGAGGCTCAAGATATGATTTTGGAGGTTTACGGGGAATCTCTACCGAAGAAGAAAGATGCGGCAGATAGTGCGGCAGAGGGTGCATTTTGGTACCTGCAAAAGGAAGGTTACCTGCATAGTGCATAA 4881 0.4038 MPDGESSTAGTLPPESSVVVSDYESLSQVKIHDDTVKKDPKKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLIHEMGHLIRKPKKDLCVFLAPTVALVHQQAKVIGDSTDFKVGIYCGSSKRSKCHEHWEQEIDQYEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSEKVPRIFGMTASPVVGKGASTAANLPKSINSLEQMLDAKVYSVEDKALQSFVTTPVVNIYHYGSTANMDTSLCSSIEEIKCQSIENLSRNIEDHHKRMNTKKLLNRVHDNVIFCLQNLGIWGALQASHILLGGDHSERHALVEAEGNSSDESACDKYLAKAAELFASKCMAGDGVSDPSSVEILKEPFFSAKLLRLIGILTSFRLQQNMKCIIFVNRIVTARSLSYILQRLKLLRQWKSDFLVGVHSGVKSMSRKTMNIIVEKFRSGELNLLIATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMLRSEYAFLVDSNNEKELEIIGGFKNDEFRMNTEITVRTSNETYKTPVERIFKVDSSGASVSSGYSISLLHQYCSKLPHDEFFDPKPNFFYFDDLGGVVCQITLPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKIGALNDCLLPKQNDAEPEKVLDSSNSDECEDDISRGELYEIRVPSAFGQSWKNEEKTVHLNSYYIKFYPTPEDRVYKKFGLFIMTRLPMEAEKLELDLHLAHGRSVMTKFIPFGVSEFNKDEIKMAENFQEMFLKIILDRLKFVSKFVELGDKSNSPSNSTFYLLLPVILEVYDDAMKVDWKTVKRCLCSPIFRNLETTSDKKVTSLDIHLQLANDYKSVKDVENSLVYVPHTKLFFFVTNVIYEKNGFSPYKDSGTSSYADHLMEKFSIPLKYPEQPLLHAKPLFNLHNLLHNRNHEHAEPNELEEYLIYLPPELCELKVVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHQLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSSVVNNSNLFKLAIRRNLQVYICDQVFDPLQFYALGRPCPRVCTEETEDSIHLCLNSDGKKRSATSTRCNKNHHWLHRKTVADVVEALVGAFIVDSGFKAATVFLTWIGIQVNFEASQVVNICTGSVGYFPLSADVDIPSLEEKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFDEFLLCDSTPLTEAIIKYVDHMRRSVSHCGTSGGPKSPKALGDLVESCVGAVLLDSGFDLNKVWEIMTSFLDPIMKFSSSLQLSPIRDLQELCQCHNLELQLLTSKQAKTFSVEAKVIGNDVCEKAFVTGQNKKDATRIASQLLFSNLKAQGLKPKTKTLEEVLKSTFKKKPKLIGYDETPIDVTDATTIGQLMANGDLCNKSNPEIRPIQEVADESASCVKPVGQQLQSFPKEKLQETSRKRDCASDSSKTGTARSRLYELCAAYCWKPPKFECCKEEGPDHLKLFTFKATMEIEEAQDMILEVYGESLPKKKDAADSAAEGAFWYLQKEGYLHSA 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00663 1626 CDD DEXHc_dicer 42 241 - -
Car07g00663 1626 Pfam PAZ domain 863 986 IPR003100 GO:0005515
Car07g00663 1626 SUPERFAMILY RNase III domain-like 1014 1175 IPR036389 GO:0004525|GO:0006396
Car07g00663 1626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Car07g00663 1626 SUPERFAMILY dsRNA-binding domain-like 1543 1623 - -
Car07g00663 1626 Pfam Dicer dimerisation domain 572 657 - -
Car07g00663 1626 Gene3D - 44 302 IPR027417 -
Car07g00663 1626 SMART DRBM_3 1544 1618 IPR014720 -
Car07g00663 1626 SMART DRBM_3 1374 1438 IPR014720 -
Car07g00663 1626 ProSiteProfiles PAZ domain profile. 834 965 IPR003100 GO:0005515
Car07g00663 1626 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1543 1619 IPR014720 -
Car07g00663 1626 Gene3D Ribonuclease III domain 1200 1371 IPR036389 GO:0004525|GO:0006396
Car07g00663 1626 CDD DSRM_DCL_plant 1550 1619 - -
Car07g00663 1626 Gene3D - 381 542 IPR027417 -
Car07g00663 1626 Gene3D paz domain 857 963 - -
Car07g00663 1626 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1373 1439 IPR014720 -
Car07g00663 1626 SUPERFAMILY RNase III domain-like 1201 1365 IPR036389 GO:0004525|GO:0006396
Car07g00663 1626 Pfam Helicase conserved C-terminal domain 394 505 IPR001650 -
Car07g00663 1626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 543 IPR001650 -
Car07g00663 1626 SMART helicmild6 418 508 IPR001650 -
Car07g00663 1626 SMART ultradead3 40 242 IPR014001 -
Car07g00663 1626 SUPERFAMILY PAZ domain 861 963 IPR036085 GO:0005515
Car07g00663 1626 ProSitePatterns Ribonuclease III family signature. 1237 1245 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 SUPERFAMILY dsRNA-binding domain-like 1328 1438 - -
Car07g00663 1626 CDD RIBOc 1015 1171 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 Pfam DEAD/DEAH box helicase 46 207 IPR011545 GO:0003676|GO:0005524
Car07g00663 1626 Gene3D Dicer dimerisation domain 568 664 IPR038248 -
Car07g00663 1626 ProSiteProfiles Ribonuclease III family domain profile. 1202 1346 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1544 1618 - -
Car07g00663 1626 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 572 662 IPR005034 GO:0016891
Car07g00663 1626 PANTHER DICER-RELATED 40 1621 - -
Car07g00663 1626 ProSiteProfiles Ribonuclease III family domain profile. 1016 1161 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 PANTHER DICER-LIKE PROTEIN 4 40 1621 - -
Car07g00663 1626 SMART riboneu5 1217 1369 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 SMART riboneu5 1014 1181 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 Gene3D - 1372 1440 - -
Car07g00663 1626 CDD RIBOc 1218 1368 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 Coils Coil 1375 1395 - -
Car07g00663 1626 SMART PAZ_2_a_3 841 991 IPR003100 GO:0005515
Car07g00663 1626 Pfam Ribonuclease III domain 1030 1161 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 Pfam Ribonuclease III domain 1237 1346 IPR000999 GO:0004525|GO:0006396
Car07g00663 1626 Gene3D Ribonuclease III domain 1009 1173 IPR036389 GO:0004525|GO:0006396
Car07g00663 1626 Gene3D - 1550 1620 - -
Car07g00663 1626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 522 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00663 Car-Chr7 5774113 5795781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00663 406 532 Eukaryotic Initiation Factors Gene Family AT1G72730 31.008 9.99e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00663 K11592 - gmx:100818702 2541.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00663 07 5774113 5795781 Car07g00663 07 5774113 5795781 ECH