Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00614 ATGGCGAGGTATCGTAGCCGGAGCAGAAGTTACAGCCCTCGCCGCCGCAGCAGAACTCCACCACGCGGCCGTAAGAGATACGTTGATGATCGCCATGCTGATAGTAGGTCTCACAGAGACCGTCGATCTCCTCTTCCTTCTGGATTACTTGTTCGTAATCTTCCCCTTGATGCAAGgcctgaagatcttaggggcccttttgagcgctatggacctgtgaaggatgtttaccttcctagaaattactacactggTgagcctcgtggctttggatttgtaaaatatcgatatggcgaagatgcagcagaggcaaagcaacatcttaatcacagtatcattggggggcgtgaaataagaatcgtgtttgctgaggaaaataggaaaacccctcaagaaatgcgtGTTACTTCTCGTGGAAGTGGTCGAAGTGGAGGTGGTAGTAGAAGGAGAGCTCGGTCAAGATCTCCACGGCGCCGATATCGATCCTACTCTAGGTCTCCATCACCTGCCAGGGCTGATTCAAGGTTTGATTTTTACACATCTGTAATGGTTTATTTTTCCTTGTGCCAATTTATATATTTTGCTGAGCATATTATCATATTAATATGTATCATCATGTTTGAACTAAAGCATAATTTACAATTATTGTGGTTCGTCAAACGGCAATCTTTGACTGTATTTTGGCACTGA 690 0.3029 MARYRSRSRSYSPRRRSRTPPRGRKRYVDDRHADSRSHRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHSIIGGREIRIVFAEENRKTPQEMRVTSRGSGRSGGGSRRRARSRSPRRRYRSYSRSPSPARADSRFDFYTSVMVYFSLCQFIYFAEHIIILICIIMFELKHNLQLLWFVKRQSLTVFWH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00614 229 SMART rrm1_1 48 121 IPR000504 GO:0003723
Car07g00614 229 MobiDBLite consensus disorder prediction 128 171 - -
Car07g00614 229 SUPERFAMILY RNA-binding domain, RBD 49 152 IPR035979 GO:0003676
Car07g00614 229 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 176 - -
Car07g00614 229 MobiDBLite consensus disorder prediction 1 48 - -
Car07g00614 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Car07g00614 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Car07g00614 229 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Car07g00614 229 Gene3D - 21 166 IPR012677 -
Car07g00614 229 MobiDBLite consensus disorder prediction 1 22 - -
Car07g00614 229 MobiDBLite consensus disorder prediction 23 45 - -
Car07g00614 229 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 176 - -
Car07g00614 229 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00614 Car-Chr7 5356095 5360442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00614 39 134 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 8.73e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00614 K12900 - zju:107423311 223.402