Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00590 ATGGAACGGTACGGCCGGACTAACGAAGGGTCGCAGTCTGATCCGACGCCGGAATGGAACGTCGGTGGAGGAGATACAACTCTTGAAGCAGGGTATGGATTAGTTGGTGGTGAATCGTATCCTCAAAGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCTCGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCTAGGATTGCAGGGGAGTATCCTGAACGAGTTGGACAGCCAGTGTGCCAGTATTATATGAGAACGGGATCATGCAAATTTGGTGCATCATGCAAGTATCACCATCCTAGACAGGCAGCAGGCACTACTACCCCTGTCTCGCTAAATTATTATGGATATCCATTGCGAGTGCCTGCGGGTGTCCAAATGCTACCACCGTCACCAGTTCCCCAAGTTTCACCTCTCCCTATGCCAGTACCTTCACCAATTTATCAAACTGTACAGCCTCCGTCCGGTCCTTCATCACAACAATACGGTGTACTGGTTGCGAGGCCACCTTTGCTACCTGGCTCATTATTCCAGGGCCCCTATGGACCTATGGTAGTGTCCCCCACCATGGTCCCCTTTCCAGGCTGGAGTCCTTATCAGGCTCCAGGGGGAAGTCCTGTACTTCCTTCGAGTACTCCATTGAGTGTTGGTTCAACTCAGCTTTATGGGATAACCCAGCTACCTTCACCAGCAACTGCTTATACTGGACCTTATCAATCTTCTGGTTCCTCAACTGGTCCTTCCGGCAGTATTCAAAAGGATCACTCATTACCCGAAAGGCCCGATCAGCCAGAATGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTTCTTCATGTAGATACCATCATCCACCGGACACGGGTGCACCAAAAGGGAATGTGAACCTTAGTCCTATCGGTCTTCCTTTGCGCCCGGGGGCACAACCCTGCACTCATTATGCGCAGCGTGGAATTTGTAAGTTTGGTCCGGCATGCAAATTTGATCATCCTATGGGATCCCTGAGTTATAGTCCATCTGCTTCTTCACTGGCCGATATGCCAGTTGCACCATATCCTGTGGGTTCCTCCATCGCTACTCTTGCCCCATCATCCTCATCATCCGAGTTGCGGCCTGAACTTGCCTCAGGATCCAGCATGGAGTCTGCTTCATCCAGAATGTCATCATCAACGAGCACATCGACTGCGTCAGTTGGCCTGACTTTGTCGACTGTTGGACCTGTTTCTCAATCAAGTATCCAGCCATCTGCTCCAAGTTCCAGTTCTTTAGCAGCTCCCAGTGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1365 0.5018 MERYGRTNEGSQSDPTPEWNVGGGDTTLEAGYGLVGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTTTPVSLNYYGYPLRVPAGVQMLPPSPVPQVSPLPMPVPSPIYQTVQPPSGPSSQQYGVLVARPPLLPGSLFQGPYGPMVVSPTMVPFPGWSPYQAPGGSPVLPSSTPLSVGSTQLYGITQLPSPATAYTGPYQSSGSSTGPSGSIQKDHSLPERPDQPECHHYMKTGECKFGSSCRYHHPPDTGAPKGNVNLSPIGLPLRPGAQPCTHYAQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIATLAPSSSSSELRPELASGSSMESASSRMSSSTSTSTASVGLTLSTVGPVSQSSIQPSAPSSSSLAAPSATTSSTVSHTSS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00590 454 MobiDBLite consensus disorder prediction 247 279 - -
Car07g00590 454 Gene3D - 263 349 - -
Car07g00590 454 PANTHER PROTEIN PHOSPHATASE RELATED 135 444 - -
Car07g00590 454 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Car07g00590 454 SUPERFAMILY CCCH zinc finger 277 302 IPR036855 GO:0046872
Car07g00590 454 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 134 - -
Car07g00590 454 MobiDBLite consensus disorder prediction 1 23 - -
Car07g00590 454 MobiDBLite consensus disorder prediction 247 266 - -
Car07g00590 454 PANTHER PROTEIN PHOSPHATASE RELATED 1 134 - -
Car07g00590 454 SUPERFAMILY CCCH zinc finger 323 350 IPR036855 GO:0046872
Car07g00590 454 SUPERFAMILY CCCH zinc finger 45 71 IPR036855 GO:0046872
Car07g00590 454 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
Car07g00590 454 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Car07g00590 454 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Car07g00590 454 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 135 444 - -
Car07g00590 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 324 347 IPR000571 GO:0046872
Car07g00590 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
Car07g00590 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Car07g00590 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Car07g00590 454 SUPERFAMILY CCCH zinc finger 91 116 IPR036855 GO:0046872
Car07g00590 454 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Car07g00590 454 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Car07g00590 454 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Car07g00590 454 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Car07g00590 454 MobiDBLite consensus disorder prediction 376 454 - -
Car07g00590 454 Gene3D - 41 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00590 Car-Chr7 5173163 5176987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00590 1 416 C2H2 Transcription Factor Family AT5G18550 53.611 1.48e-130 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car07g00590 zf-CCCH 3.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00590 - - mtr:MTR_4g119280 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00590 07 5173163 5176987 Car07g00590 07 5173163 5176987 ECH
Car07g00590 07 5173163 5176987 Car01g00534 01 4297343 4304185 PCT