Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00585 ATGATGGATAACAACAACATTGGAGGAAGTACCTCTAACAATATTGAAAACGGTAGCATAAAGGAACAAGATCGTTTGTTACCAATAGCCAATGTTGGGAGAATAATGAAGCAGATATTGCCTCAGAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAATGTGTGTCAGAGTTCATAAGCTTTGTGACAAGTGAAGCATCTGagaaatgcaggaaagaaagaagaaagacagTGAATGGAGATGATATCTGTTGGGCTTTAGGGACACTTGGTTTTGATGATTATGCTGAGCCTATGAGAAGGTATTTGATTAGATATAGAGAATTAGAAGCTGATAGAAATACCAATAATATTAATGTTCAAGATAGAGGAAATAGTCCTCAAGAGAATGATCATGAACTTTTTATGTTTCCACCTAGAGGATCCAACTAG 441 0.3333 MMDNNNIGGSTSNNIENGSIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLIRYRELEADRNTNNINVQDRGNSPQENDHELFMFPPRGSN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00585 146 Gene3D Histone, subunit A 13 139 IPR009072 GO:0046982
Car07g00585 146 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Car07g00585 146 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Car07g00585 146 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Car07g00585 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 134 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car07g00585 146 MobiDBLite consensus disorder prediction 119 146 - -
Car07g00585 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Car07g00585 146 SUPERFAMILY Histone-fold 23 132 IPR009072 GO:0046982
Car07g00585 146 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Car07g00585 146 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 9 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00585 Car-Chr7 5110588 5111409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00585 20 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.320 3.20e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car07g00585 CBFD_NFYB_HMF 5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00585 K08065 - gmx:100794513 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00585 07 5110588 5111409 Car01g01046 01 10077378 10078038 PCT