Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00550 ATGGAAAACGAAAGCGGAACTAACAACTACGCACGAAGCGCCGGCAACAACTCCGCCGGTCCCGTCACTTTCGACGTCAACCGTGAAACGGGTCGGGTTTTACCCAAATGTAACCATAGTTTTCACATTGATTGTATTGATATGTGGTTTCAGTCTCACTCTACTTGTCCACTTTGTAGAGCACCTGTGGAGCCTCCACCGGTTCAAGTGACCCGATCCGAAGTGACAGTTTCAGTGTGTGAACCGGAACCGCTTCCGGGTTCGAGTTATGGTGAAGAGGTGAATCGGTCTGAACCGGGTTTTTCTTCTTCCTCTTGTTCTATTGAGAAGCAGTCTTCGTTTACGGACGTGGTTATTGAGATTCCGGGAAGGAGCGAAGTCGAATCGGGTTGTGATTCGCCGTCGTCGTTTCGATCGCCGATGAGTCGGGTGATGTCGTTAACGAGAATTCTTAGCAGAGAGAGGAAACCAAGCGTTTCTCCTTCGTCAGATTGTGTCGCGGTAAACGATTCAGTGATTGAGTTAGAATCAGAAAGAGGTGGAAGGGACGAGACTCAGTGA 561 0.492 MENESGTNNYARSAGNNSAGPVTFDVNRETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEPPPVQVTRSEVTVSVCEPEPLPGSSYGEEVNRSEPGFSSSSCSIEKQSSFTDVVIEIPGRSEVESGCDSPSSFRSPMSRVMSLTRILSRERKPSVSPSSDCVAVNDSVIELESERGGRDETQ 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00550 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 64 IPR013083 -
Car07g00550 186 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 29 162 IPR044675 -
Car07g00550 186 PANTHER RING-H2 FINGER PROTEIN ATL3 29 162 - -
Car07g00550 186 SUPERFAMILY RING/U-box 26 66 - -
Car07g00550 186 CDD RING-H2_EL5_like 25 60 - -
Car07g00550 186 Pfam RING-H2 zinc finger domain 32 60 IPR024766 GO:0008270
Car07g00550 186 MobiDBLite consensus disorder prediction 1 22 - -
Car07g00550 186 MobiDBLite consensus disorder prediction 84 107 - -
Car07g00550 186 ProSiteProfiles Zinc finger RING-type profile. 37 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00550 Car-Chr7 4828218 4829036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00550 29 183 Rapid Response to Elicitors AT3G16720 42.458 4.86e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00550 - - gsj:114368044 151.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00550 07 4828218 4829036 Car07g00550 07 4828218 4829036 ECH
Car07g00550 07 4828218 4829036 Car01g00993 01 9373850 9375240 PCT