Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00529 ATGAATCTAAGTAACGGTAAAGGATCCATTTCTCCGGTGATTTCAACTATGACTATGAAATCCGGTGAAACTTCTGACCAGTTTCCGGCGGGTTTACGTGTTCTGGTAGTGGATGATGATCCCACGTGTCTTATGATCCTCGAGAAGATGCTTCGCACATGTCTTTACGAAGTTACAAAATGCAATCGAGCTGAGACTGCACTTTCACTCCTTAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTCCATATGCCTGACATGGATGGATTCAAACTTTTAGAGCACATTGGATTGGAAATGGACCTTCCGGTTATTATGATGTCTGCGGACGATGGTAAAAGTGTTGTTCTGAAGGGTGTAACGCATGGTGCTTGTGATTACCTAATTAAACCTGTTCGTATAGAGGCTTTGAAGAACATATGGCAACATGTGGTTCGGAAGAAAAAGAACGAGTGGACAGAGCAATCGGGTAGTGCTGATGAAGCAGATCGTCATCCAAAGGCATCTGACGATGCTGATTATTCGTCGTCTGCTAATGAAGGAACTTGGAGAAACTCAAGAAAAAGAAGGGACGAGGAAGAGGAAGCTGATGATAGAGATGATTCGTCCACGCTAAAGAAGCCACGAGTTGTTTGGTCTGTCGAGCTCCATCAGCAGTTTGTGGCTGCTGTGGATCAGCTTGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACGAGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGATTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAACTTGAACAACTCCTTTCTCAGCCCACAAGAGGCATCATTCGGGACAATTTCATCTATTAGTGGTCTTGATCTTCAAACTCTTGCAGCTGCTGGTCAGCTCCCAGCACAAAGTCTAGCCACTCTTCAAGCTGCGGGACTCGGTAGGTCAACTGCAAGACCAGGCTTACCAATGCCTCTTGGGGATCAAAGAAACCTTTTCAGCTTTGAAAACCCTAGGTTGAGATTCGGAGAAGGGCAACAGCAACATTTGAGCAACAATAAACCAACAAATCTTCTTCATGGAGTTCCTACTAACATGGAGCCGAAGCAGCTTACCAATTTGCACCAGTCTGCACAATCCCTCGGCAACTTGAACTTGCGAGTCGCTGGTTCATCTTCACAGGGAAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGCGAAAATACCAGCCCTCGTGTTCCGAGACTACCGAACCCCTTAGGACAGCCTAATGTATCAAATGGATTTTCCGACGGTCTTCTGGGGAGAAACGGCATAACTGGTGGCAGCAGACCGCCTGCTTATAATCCTCTTGCACCAAGCTCTTCATTTTTGAGTTTTCCCATGAATCAAAGCACTGAAATGTCTGCTACTAATTTCCCTCTTGGAAGCACTCCGGGAATATCTAGTATCCCAACCAAAGCCTCGTTTCATGCGGAAATTACTTCAGGAATGAAAGGATCTGCCGGTTTTCCAAGTTACGATATTTTTAATGAACTACACCATCAGAAGTCCCGAGATTGGGGGATGACAAACACAAGCCTAACATATGACTCCTCTCAGCATGCAAATCCTTTACACAATAACATCGATGTCTCTCCGTCAGTTTTAGTCCATCAGGGTTATTTTTCTACCCAACAAACTGGACAAAGCAGAGATGCTGCCCCATTGATTGGAAAATCTCCTTTCTCTCTGGGAGAAAGCTCGGAACATGGTAATCTCCAAAACGGCGGTCAACACCTAAATCCCCTTCTCGTCGAAAGCTCAATAAGGATTAAGGCTGAAAGATTTCCCGATGCAAGCTCCCAGACTAATCTCTTCCCTGAGCATTATGGACAGGAGGATCTTATGAGTGCACTTCTGAAACAGCAGGAAGGTATTGGACAAGCTGAGAATGAGTTTGACTTTGATGGTTATTCTCTAGACAACATTCCTGTCTAG 2031 0.4481 MNLSNGKGSISPVISTMTMKSGETSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVLKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWTEQSGSADEADRHPKASDDADYSSSANEGTWRNSRKRRDEEEEADDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLSPQEASFGTISSISGLDLQTLAAAGQLPAQSLATLQAAGLGRSTARPGLPMPLGDQRNLFSFENPRLRFGEGQQQHLSNNKPTNLLHGVPTNMEPKQLTNLHQSAQSLGNLNLRVAGSSSQGNPLLMQMAQSQPRGQMLSENTSPRVPRLPNPLGQPNVSNGFSDGLLGRNGITGGSRPPAYNPLAPSSSFLSFPMNQSTEMSATNFPLGSTPGISSIPTKASFHAEITSGMKGSAGFPSYDIFNELHHQKSRDWGMTNTSLTYDSSQHANPLHNNIDVSPSVLVHQGYFSTQQTGQSRDAAPLIGKSPFSLGESSEHGNLQNGGQHLNPLLVESSIRIKAERFPDASSQTNLFPEHYGQEDLMSALLKQQEGIGQAENEFDFDGYSLDNIPV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00529 676 SMART REC_2 32 144 IPR001789 GO:0000160
Car07g00529 676 MobiDBLite consensus disorder prediction 421 442 - -
Car07g00529 676 MobiDBLite consensus disorder prediction 154 174 - -
Car07g00529 676 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Car07g00529 676 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Car07g00529 676 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Car07g00529 676 MobiDBLite consensus disorder prediction 186 207 - -
Car07g00529 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 648 IPR045279 GO:0009736
Car07g00529 676 SUPERFAMILY CheY-like 31 152 IPR011006 -
Car07g00529 676 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Car07g00529 676 Gene3D - 32 169 - -
Car07g00529 676 MobiDBLite consensus disorder prediction 154 207 - -
Car07g00529 676 PIRSF RR_ARR_type-B 14 668 IPR017053 GO:0003677|GO:0003700|GO:0009736
Car07g00529 676 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Car07g00529 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 266 IPR017930 -
Car07g00529 676 Gene3D - 207 269 - -
Car07g00529 676 CDD REC_typeB_ARR-like 34 148 - -
Car07g00529 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00529 Car-Chr7 4680104 4684537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00529 67 676 Response Regulator Gene Family AT3G16857 50.995 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car07g00529 Response_reg 6.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00529 - K14491 gmx:100814930 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00529 07 4680104 4684537 Car07g00529 07 4680104 4684537 ECH
Car07g00529 07 4680104 4684537 Car01g00966 01 9048490 9052816 PCT