Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00491 ATGAACTACAACAATAATCGTCCAAGTCCCGGCGGTTTCCGCTCCAACCCCGCTCCTCTTCATCGCAACTTTGATAGTCCGTCGCGTTGGTCTCCAGGTAGGGTTGAACCCTTCCGTCCACCTCCTGCCGGTGATGGCTTCAGGCCGATGCCCGGTGACGGTCCTGGCGAGTTTGGATTCAACGCTCACCAGCCACCGCAGTTGTCTGGTCAGAAACGAGGGTTTCCTTTCTTTGGACGCGCTGCTTCACCGGATCGTTCTGATGGTGGGAATTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGAACAGCAACTGAGGAAGATATTCGTCCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTCGCCTTGATCAAAGATAGAAAGACTGGACAGCATCAAGGTTGTTGCTTCATAAAATATGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAATATACTCTTCCAGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCAGATGGTGAAAGAGAACGCCTTGGTGCAGTTGAGTACAAACTATTTGTGGGCTCTCTGAACAAACAGGCTAGTGTAAAGGAAGTCGAGGAAGTTTTCTCAAAATATGGGCGGGTTGACGATGTTTATCTTATGCGCGATGACAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATACTCTAATAGAGATATGGCAATGGCAGCTATCAATGCACTTAATGGAATCTATACAATGAGAGGTTGTGATCAACCACTGATTGTCCGGTTTGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGAGCTCCAGGGTTTGGTCCTAGATTGGATGCACCGGGCACTAGACTTCCATCAAATATTTCTGATCCTATGGGTGATCATATGCCTCCTCTTAATGCTTGGCGTCCAATCCATCCACAAAATACGGGGCCATCCTTTAATGCTGGTTTTCACGGCATGGGCCCTCCATCGGTTCCAAGAACTGGCGACATGGCATTGCCTATAAATGCAGGTGGTCCTATGACTGGCATGGGAGTCTCCATAGATGGTCGTTTTCAAGTTCAGTCTCCGTCAACAATGCCACAACAGAATTTCAACCAGCCTCTACCACAACTTCCACCAGTCAATCAACAAATACCACCATCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTCATATCCTCAAGCTCCAATGTCCTATCCACAAGCATCAACGTTTTCATCTATCAGACAGCATGGACAGTCACAGCCTCTCTCTGTGGGTCCGCAGGGACATGGCATAAGTGCACAGTTTTCAGCTTCTCAGCCTCAAACTCAGCAGAATGCTTTGTCTGCTACAATTCCTCAGAACTCTCTTGATACCAGCATGCAATCTAATACAGCATTGACTACTCCAAGTCGACAGCAAATTCCTCCCTCTATGCAGCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGTTGGTGTCACAACAAACACAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACATCAATTGCAGATGATGCAGCCATCCAGTCAATCATTGACATTGCAGCAACATGCAGAAGCTACTAAAACGCAGTCTCAATGGGGTGGAACTGTAGCACAGGCAGGAACCGGAACTCATGTGGCTGCACCTGTTTCAGGTGCTCCTTCATCAACATCTGCTACTTCTGCCGTACAAGCAATAACCCAGAACACAGCTCTTGCAAAATGTAATTGGACTGAGCATATATCTCCCGAGGGCTTCAAATACTACTATAATAGTGTGACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAATTGACATTATTTGAACAGCAAAAGCAACAGCAGAGGCAGTCTGTCCAGCAGTCCCAAAGTCATTCACAGCCGTCAATACTATCCACACAACAGATTGCACAAAACCAACAGGTTCAGCCTCAGAGTAATTTCCGAGGACAAGTTCCCCACCATCAACAAATACAGCAACCTTCTTTGTCTTCATCGTTCCAGGAATATGGTGTTACTGGTCATCAAAATGTTCAGGAACTTGGTTATAAACAGTTACAGTCATCATTTCTTTCTGCTAGTGATCCTGGACGTTATTCACAGGGTATTAATACTGCTCAAGAGCTGATGTGGAAAAACAAGCCTGCAGGAGTCTGA 2235 0.468 MNYNNNRPSPGGFRSNPAPLHRNFDSPSRWSPGRVEPFRPPPAGDGFRPMPGDGPGEFGFNAHQPPQLSGQKRGFPFFGRAASPDRSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQYTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRVDDVYLMRDDKKQSRGCGFVKYSNRDMAMAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGAPGFGPRLDAPGTRLPSNISDPMGDHMPPLNAWRPIHPQNTGPSFNAGFHGMGPPSVPRTGDMALPINAGGPMTGMGVSIDGRFQVQSPSTMPQQNFNQPLPQLPPVNQQIPPSQKPIQSSQEFPPSHQSYPQAPMSYPQASTFSSIRQHGQSQPLSVGPQGHGISAQFSASQPQTQQNALSATIPQNSLDTSMQSNTALTTPSRQQIPPSMQQQPLQPLQQSPSQLAQLVSQQTQTLQASFHSSQQAFSQLQHQLQMMQPSSQSLTLQQHAEATKTQSQWGGTVAQAGTGTHVAAPVSGAPSSTSATSAVQAITQNTALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLFEQQKQQQRQSVQQSQSHSQPSILSTQQIAQNQQVQPQSNFRGQVPHHQQIQQPSLSSSFQEYGVTGHQNVQELGYKQLQSSFLSASDPGRYSQGINTAQELMWKNKPAGV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00491 744 Gene3D - 83 179 IPR012677 -
Car07g00491 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 159 IPR000504 GO:0003723
Car07g00491 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Car07g00491 744 Gene3D - 180 272 IPR012677 -
Car07g00491 744 ProSitePatterns WW/rsp5/WWP domain signature. 603 628 IPR001202 GO:0005515
Car07g00491 744 MobiDBLite consensus disorder prediction 635 690 - -
Car07g00491 744 ProSiteProfiles WW/rsp5/WWP domain profile. 603 630 IPR001202 GO:0005515
Car07g00491 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 264 IPR000504 GO:0003723
Car07g00491 744 CDD WW 600 630 IPR001202 GO:0005515
Car07g00491 744 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 60 701 - -
Car07g00491 744 SUPERFAMILY RNA-binding domain, RBD 75 178 IPR035979 GO:0003676
Car07g00491 744 SMART rrm1_1 185 260 IPR000504 GO:0003723
Car07g00491 744 SMART rrm1_1 94 170 IPR000504 GO:0003723
Car07g00491 744 MobiDBLite consensus disorder prediction 34 48 - -
Car07g00491 744 MobiDBLite consensus disorder prediction 1 71 - -
Car07g00491 744 PANTHER TRANSFORMER-2-RELATED 60 701 - -
Car07g00491 744 SUPERFAMILY RNA-binding domain, RBD 184 283 IPR035979 GO:0003676
Car07g00491 744 MobiDBLite consensus disorder prediction 391 506 - -
Car07g00491 744 MobiDBLite consensus disorder prediction 364 382 - -
Car07g00491 744 SMART ww_5 598 630 IPR001202 GO:0005515
Car07g00491 744 Gene3D - 597 648 - -
Car07g00491 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Car07g00491 744 MobiDBLite consensus disorder prediction 265 289 - -
Car07g00491 744 SUPERFAMILY WW domain 602 634 IPR036020 GO:0005515
Car07g00491 744 MobiDBLite consensus disorder prediction 364 506 - -
Car07g00491 744 CDD RRM2_FCA 185 264 IPR034645 -
Car07g00491 744 Pfam WW domain 602 628 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00491 Car-Chr7 4338976 4349212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00491 95 299 Eukaryotic Initiation Factors Gene Family AT1G71770 23.902 1.68e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00491 - - gmx:100798390 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00491 07 4338976 4349212 Car07g00491 07 4338976 4349212 ECH