Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00470 ATGGATGTAATTAAAGAAAGAGAAAACAACAAAAAGAAGAAGAGCATGGTGAGTAGTAGTTGTAGTGAGGATGAGATGGATCTACGAAGAGGGCCATGGACCATAGATGAGGACCTCACACTCATTAATTATGTTGCTACTCATGGGGAAGGTCGTTGGAATACCCTAGCCCTCGATGCTGGTCTCAAACGAACAGGAAAAAGTTGTAGATTGAGGTGGCTTAACTATCTTCGTCCCGATGTTAGACGCGGAAACATAACACTCGAAGAACAACTTTTGATTCTTGAGCTTCATACTCATTGGGGTAACAGATGGTCCAAAATAGCTCAATATTTACCGGGAAGAACTGACAACGAAATAAAGAATTATTGGAGAACTCGTGTACAAAAACTCGCTAAACATCTGAAATGTGACGTGAATAGCAAGCAATTCAAGGACAGCATGCGCAACCTTTGGATGCCAAGATTAGTTGAACGCATTCAAGCAGCCGCCACTGCCACCACCACCACAAGCGTTGCCGCGAATAACACACACACCATCAATAACAGGGACAAATTATTAATGAAGTCAAGTCCAACAATTATAAACGATGAATTTGTGAGTTCACAGCCACATATGACACAAAGTTATAGTACTCAAGAATACAACAATACATCCTCATCATCAAATTCATTTGGGAATAATAAGGTCTCAACAACATTATTTGATTTGGATGATAATAGTAACTATTACACAAAGGATAATAACCCTAATCCTAATTTAGATTATTATCAACCATCTCATCAACATAGCTTCTCAGATTGCATCATGGAGCCAAACACACCGTGGATCATGCAAAGTGGGGACTCATCAGACATTTTTTGGAATGCTGAAAACATGTTGTTTTTACAGCAACAACTCATGAATGATACCATGTAA 918 0.3911 MDVIKERENNKKKKSMVSSSCSEDEMDLRRGPWTIDEDLTLINYVATHGEGRWNTLALDAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTHWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKHLKCDVNSKQFKDSMRNLWMPRLVERIQAAATATTTTSVAANNTHTINNRDKLLMKSSPTIINDEFVSSQPHMTQSYSTQEYNNTSSSSNSFGNNKVSTTLFDLDDNSNYYTKDNNPNPNLDYYQPSHQHSFSDCIMEPNTPWIMQSGDSSDIFWNAENMLFLQQQLMNDTM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00470 305 MobiDBLite consensus disorder prediction 1 25 - -
Car07g00470 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Car07g00470 305 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 13 300 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car07g00470 305 CDD SANT 32 77 IPR001005 -
Car07g00470 305 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Car07g00470 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Car07g00470 305 CDD SANT 103 126 IPR001005 -
Car07g00470 305 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Car07g00470 305 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Car07g00470 305 Pfam Myb-like DNA-binding domain 83 126 IPR001005 -
Car07g00470 305 Gene3D - 87 128 - -
Car07g00470 305 SMART sant 29 79 IPR001005 -
Car07g00470 305 SMART sant 82 130 IPR001005 -
Car07g00470 305 PANTHER MYB TRANSCRIPTION FACTOR 13 300 - -
Car07g00470 305 Gene3D - 27 83 - -
Car07g00470 305 MobiDBLite consensus disorder prediction 205 224 - -
Car07g00470 305 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00470 Car-Chr7 4189527 4191520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00470 19 304 MYB Transcription Factor Family AT2G47190 49.477 1.91e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g00470 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00470 K09422 - gmx:100791349 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00470 07 4189527 4191520 Car07g00470 07 4189527 4191520 ECH