Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00437 ATGATGGAACCAGAAGAGTGGGACTTGAGCGCTGAAGACCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAGATTGCTCTACTCCGCGCCAACCCTCCTTCTTCTTCTCAACAACAACAACAACCCCATTCTCATTCTCATTCTGCAAACCCCCCTCCTCTAAAAGTTGACGCTTTCTCTCAAGGATCTAGACCACTTCCCGCCTCATTCAAATCAGGAACAAACAACACTGCCAATGATGAACATTCTAAAGAATTGGTCAAAATTTCGGTCAAATTTTTCCTCCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGATCAGGCAGTAGTTGCTGCTTTTAGAAGAATCCCTAAATCTACTTGGAATGCCAAAGAGCGGTTATGGATGTTCCCTCTAACTTCTTTGTCAGAAGCAGAAAAGGTTCTTAGAGAATTACCTGGTTATAATGTTCAGGTGGAGAACTTAGATTCCTTAGTGCAACGAGCTATTACCGCTGCCACTTCTGTTCCTGATCTTCGAGATCGATATGATAAGATCCCAAGCTATATTGAATCAAAGCTTTTGCCATTTCAGCGGGATGGTATAAGGTTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGATTCATGGCCTGTTCTCATACTTGCACCATCTGCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGTGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATCCATCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGCTGCAAAATACGCTTATGAGGTCTGACTTTAAGGTTGTAATTGCCGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCCTCTCTTCCGGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTCTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAGTTTTTGGACTTTATCAAGGGGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGCTATGATTCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCCTAGACTTGGCCGACAAAGACATGAAGCAAATCAATGCTCTATTTCGTGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCATCTAGCTCAAAAGAGGAGGCTGAATCACTCAAGTTCACACAAAAGAATCTTATCAACAAGATTTATACCGATTCTGCGGAAGCCAAGATTCCAGCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGGTTGCATCCGGATTGATGGAGGTACGCCTTCTGGATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAGGATGCTATTAAGGCAGCTGTGCTGTCTATTAAAGCTGGAGGAGTTGGGTTAACTTTGACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCTGAAGACCGTGTACATAGAATTGGCCAGGTATCTTCAGTAAATATATACTACTTGCTGGCAAATGACACTGTTGATGATATCATATGGGACGTAGTGCAAAGCAAACTGGATAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGCTGATGAGCCAGTGAGTAGCCCTTCAAAGCAGAAAACTCTTGACCAATTTGTCAGAAGATGTGACAACAGCAAGGGTGGATTGGAACAACAGTCGACCCCCAAACGTCCCCGGTACTGA 2049 0.4231 MMEPEEWDLSAEDLDSLERDAFQKIALLRANPPSSSQQQQQPHSHSHSANPPPLKVDAFSQGSRPLPASFKSGTNNTANDEHSKELVKISVKFFLHSSGNIAAKFQYDQAVVAAFRRIPKSTWNAKERLWMFPLTSLSEAEKVLRELPGYNVQVENLDSLVQRAITAATSVPDLRDRYDKIPSYIESKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAIAVAACVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSSSAKSSIHLDGLFNIISYDLVPKLQNTLMRSDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGLYQGASNHEELHNLMKATAMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKASSSKEEAESLKFTQKNLINKIYTDSAEAKIPAVLDYVGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLKVSADEPVSSPSKQKTLDQFVRRCDNSKGGLEQQSTPKRPRY 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00437 682 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 666 IPR030101 GO:0006281|GO:0031297|GO:0036310
Car07g00437 682 Coils Coil 431 461 - -
Car07g00437 682 Pfam Helicase conserved C-terminal domain 497 598 IPR001650 -
Car07g00437 682 MobiDBLite consensus disorder prediction 29 48 - -
Car07g00437 682 MobiDBLite consensus disorder prediction 65 80 - -
Car07g00437 682 CDD SF2_C_SNF 485 609 - -
Car07g00437 682 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 370 IPR014001 -
Car07g00437 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 412 IPR027417 -
Car07g00437 682 CDD DEXHc_HARP_SMARCAL1 189 412 - -
Car07g00437 682 Pfam SNF2-related domain 203 467 IPR000330 GO:0005524|GO:0140658
Car07g00437 682 ProSiteProfiles HARP domain profile. 83 158 IPR010003 -
Car07g00437 682 Gene3D - 451 673 IPR027417 -
Car07g00437 682 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 666 - -
Car07g00437 682 Gene3D - 162 419 IPR038718 -
Car07g00437 682 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Car07g00437 682 MobiDBLite consensus disorder prediction 27 81 - -
Car07g00437 682 SMART helicmild6 515 598 IPR001650 -
Car07g00437 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 641 IPR027417 -
Car07g00437 682 SMART ultradead3 185 378 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00437 Car-Chr7 3845667 3853614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00437 469 618 RAD5 or RAD16-like Gene Family AT1G05120 29.870 6.45e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car07g00437 SNF2_N 5.8e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00437 K14440 - gmx:100797654 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00437 07 3845667 3853614 Car07g00437 07 3845667 3853614 ECH