Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00413 ATGGCGTTTCAAGATTTCGACCTCATCTCAGAACGACGCAAAAATGAGAAGAAACAACAACTGAAGAAGAGGATCCTCATTGGTGTTCTTTCTTCCGTTGTCCTCGTCGGTCTTATAGGTTGTGCATTCTTTGTTGCCACCTCCAAATACGGTGGTGGTAGCAACAAAGACAATGAACCGTCTCAAACTTCTAGTTCTAACAAGCATGTTGCACATTCAGAAAAGATTGTAAAATTGGTATGCAGTTCTGCAGATTACAAAGAAAAATGTGAAGACCCTCTTAACAAGGCAGTGGAGAAAGATCCTAAACTTCAACACCCTAAAGACCTTCTCAAAGTCTATGTAAAAATTGTTGAAGACGAGGTTAACAAAGCCTTCAACAAAACAAACACTTTCAAATTTGAAAGTGAAGAAGAGAAAGGTGCATTTGAGGATTGTAAACAACTTTTTGAAGATGCTAAGGAGGATTTACAAGCCTCAATCTCCCAACTTAGTGAAATTGAATTCAAGAAACTTTCTTCAAAAACTCCTGACTTGAACAGTTGGCTAAGTGCTGTCATCTCTTTCCAACAAACATGTATTGATGGTTTTCCTGAAGGAAAACTAAAGACTGATCTTCAGAACCTGTTTGTGGATTCCAAGGAATTTGTTAGCAATTCCCTTGCTATCGTTTCTCAGGTTTCTACATTCCTTTCTACAATGCAGACATTTGGACGTGGCCGTATGTTGTTGTCAGATAACTCTAACTCACCAGTTGCTTCTTTGGATTCTGATGGATTTCCTTCTTGGGTTCATTCTGAGGAAAGAAGGGTGTTGAAGGCTTCTAGTATTAGACCTACACCTAATGTCACTGTTGCACAAGATGGCACTGGTGACTTCAAAACCATCTCTGAAGCTTTAGCAGCCATCCCTGCAATCTACCCCGGAAGGTATGTGGTTTATGTTAAAGAAGGAGTATACGACGAGACTGTGACAATAACAAAGAAAATGCAAAATCTAACCATGTATGGTGATGGATCACAAAAGAGTATTATCACTGGTAGCAAAAACTTTAGGGATGGTGTTAGGACATTCCTAACTGCAAGTTTTGTGGTGCTAGGAGAAGGATTTTTGGGTCTAGCAATGGGATTCAGAAACACAGCTGGTCCTGATGGACATCAAGCAGTGGCAGCCAGAGTCCAAGCCGACCGTGCAGTGTTCGCCAACTGTCGTTTCGAGGGATACCAAGACACTCTATACACACAAACACATAGACAATTCTACCGCAGTTGCATCGTTTCAGGAACAATTGATTTCATCTTTGGTGATGCAGCAGTTGTGTTCCAAAATTGCATCATGGTTGTTAGAAGACCAATGGacaaccaacaaaacatggtcacagcacaaggaagaatggacaaacaacaagcaacTGGAACTGTCCTACATAAGTGTCAAATCAAAGCTGATGAAAAACTTGTTCCTGTTAAAGACACAATCAAAAGTTACCTTGGTAGACCATGGAAGGAATTCTCAAGAACCATTGTTATGGAAAGTGAAATAGGTGATTTTATTCACCCTGATGGATGGACACCTTGGATGGGAAACTTTGCATTAGATACATTGTATTATGCTGAGTTTAATAACACTGGACCTGGTGCTAGTACTAGTGCTAGAGTTAAGTGGCCTGGTTACAAAGTTATTGACAAAGAAGAAGCTAGCCAATACACTGTAGGAGCTTTCTTGAAAGGTGCATGGGTTCAAACCTCTGGTGTACCATCTCAACAAGGATTGTACTTTTAA 1782 0.3906 MAFQDFDLISERRKNEKKQQLKKRILIGVLSSVVLVGLIGCAFFVATSKYGGGSNKDNEPSQTSSSNKHVAHSEKIVKLVCSSADYKEKCEDPLNKAVEKDPKLQHPKDLLKVYVKIVEDEVNKAFNKTNTFKFESEEEKGAFEDCKQLFEDAKEDLQASISQLSEIEFKKLSSKTPDLNSWLSAVISFQQTCIDGFPEGKLKTDLQNLFVDSKEFVSNSLAIVSQVSTFLSTMQTFGRGRMLLSDNSNSPVASLDSDGFPSWVHSEERRVLKASSIRPTPNVTVAQDGTGDFKTISEALAAIPAIYPGRYVVYVKEGVYDETVTITKKMQNLTMYGDGSQKSIITGSKNFRDGVRTFLTASFVVLGEGFLGLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIVSGTIDFIFGDAAVVFQNCIMVVRRPMDNQQNMVTAQGRMDKQQATGTVLHKCQIKADEKLVPVKDTIKSYLGRPWKEFSRTIVMESEIGDFIHPDGWTPWMGNFALDTLYYAEFNNTGPGASTSARVKWPGYKVIDKEEASQYTVGAFLKGAWVQTSGVPSQQGLYF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00413 593 CDD PMEI-like_3 79 229 - -
Car07g00413 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Car07g00413 593 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 227 IPR006501 GO:0004857
Car07g00413 593 SUPERFAMILY Pectin lyase-like 278 587 IPR011050 -
Car07g00413 593 PANTHER PECTINESTERASE 14 591 - -
Car07g00413 593 Gene3D - 277 591 IPR012334 -
Car07g00413 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 228 IPR035513 -
Car07g00413 593 Pfam Pectinesterase 282 577 IPR000070 GO:0030599|GO:0042545
Car07g00413 593 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Car07g00413 593 PANTHER PECTINESTERASE 14 591 - -
Car07g00413 593 Pfam Plant invertase/pectin methylesterase inhibitor 76 223 IPR006501 GO:0004857
Car07g00413 593 SMART PMEI_2 72 223 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00413 Car-Chr7 3651979 3654422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00413 1 592 Carbohydrate Esterase AT2G26450 48.083 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00413 - - gmx:100784679 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00413 07 3651979 3654422 Car07g00413 07 3651979 3654422 ECH
Car07g00413 07 3651979 3654422 Car01g01312 01 18175966 18178317 PCT