Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00390 ATGCAAAAGCAGACCGACTTCATACCGAGTTACCCTAACCTTCCGTCCAAGTTGATTTGCTTGCTTCACAATGTTGCTCTGCATGCTGATCCCGAAACTGACGAGGTCTATGCACAGATGACTCTTCAACCAGTAAACCAATATGACAAGGAAGCGATGCTGGCATCAGACATCGGTCTCAAACAAAACCGTCAACCTACTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACAAGTACTCACGGTGGATTCTCTGTGCCGCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTATTGCTAAAGATTTGCATGACAATGCGTGGACATTTAGACATATTTATCGGGGACAACCAAAGAGGCATTTATTGACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGTTTGAGGCGCGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATATCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCTTTTACTATATATTACAATCCAAGGGCCAGCCCCTCCGAATTTGTTGTGCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGTAGATACACGGGTGCAATTACTGGAATTAGTGACTTGGATCCTATCCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCGACAGCTGGTGAACGCCCAAGTAGAGTTTCAGTTTGGGATATCGAACCGGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCTGGAATGTCAGATGATGAGTCCAATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGATTGGAGACGAGTTTGGCATGAACGACGCCTCGAGTTCATTCTTCCCCGGTTTGAGTTTAGTGCAGTGGATGGGCATGCAGCAGAATAATCAGTTTTCAGCTGCTCAATCAGGATGTTTCCCATCCATGCTCTCATCAAATACTCTGCAAGGTAATCTTGGCACCGATGACCCATCCAAATTACTAAGTTTCCAAGCTCCAGTCCTCTCTGCGCCGAACCTTCAATTTAACAAACCTAATTTACCAAAtcaaatcaaccaattgcaacaacccccagtatcatggcctcaacagcaacaacagttacagcagcagcagcaacaacaacagttacagcagcagcaacaacaacaacagcaactgcagcagcaacagcaacagaagctgcagtcattgtcgcaaataccgacaaaccaactccagcaacaaaggcaacagcagctgactgaatcacaaaatctgacactgctacagcaacaaatgcctcagcagttaggacagcaaacacagaaacatctacagtcatctcaacaaGCTATTACGAATAATGGTGTAGTTTCTTCTAACCAGATTACAAATCAGTTTGTACAGCAACCATCAGCTTACGCTCAGCTTCAGCAACAACAATTACTCTCAGGAAGCATCCCACACCAACAAAGTTTCCAATCAGCCAATAAGAATACATTCCCACTGACATCTCTTCCACAAGACTCGCAATTTCAGCAACGGATAGACTCGCAAGCGAGTCTTTTACAAAGGCAGCAACAACAGACACAATTACAACAATCTCAACTACAGGTTTTGCAACAAAACATGCCACAGAGGGTCCCACCAAATCCGCCAGTGACTCAAACGTCTCAACAAAATGCCTCGGAGCAACAACTGCACATGCAGTTTCTACATAAACTGCAGCAGCAGCAACAACTTCTTTCGACGTCTAGCCCACTTTTGCAATCTCAGCTTCTACAGCAACAAAATACTCACCAACAAATCCAGCAATTACCTCAGCTGCCTACATCCCAACATCATACTCAACAGCTTAGTAATAATGCATTTTCAACAGAGAAGCTTCTCAACAGCAACAACTTGTCTTCGTCATCTCTTATGCAATCACAACACCTTCCTGTGAATCGAACTCAGAACACGCAAAAACCACTCACAATTACTAGAGCCCCGTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACTTCTCCATCTACCAATAACTGCCCGGTTTCTCCACCGAACCTCCTGAAAAGAAATCAACAAGTACCAAATATGTTAGGGGGGTGTTTGTTAGTGGAGCCTGCTAGTAATATGATACGGGAGCTTCAGAGTAAGACTGACAAGCATATCAAACACGAGTTCGCGAATGTAAAGGGATCTGACCAGCTTAAGTATAAAAGGACAACTATCGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTCTCGATCCTGGTAACGCCCAGCAGAATTTTCCACTATCTAACTTCTGCATGGAAGGGGATGTCCAATCAAACCCTCGAAACAATCTTCTATTTGACTCTAGTTTTGATGGTTTAATGCCTGATACTATGCTTTCAAGGGGTTATGACTCCCAAAAAGATCTTCAAAATTTGTTGTCAAATTATGGTGGTGCTCCAAGAGACATTGAAACGGAGCTGTCCACCGCTGACATCAGCTCACAGTCGTTTGGACTGCCAAACATGCCCGGTTGCTCAAATGATGTTGGCATTAATGACACTTCTGGGGTTTTGAACAATGGCTTGCGAGCAAACCAAACTCAACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGACGTCACCCGTTACAAGAAATATGATGAACTCCGGTATGATTTGGCACGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGAACTGACTGGAAGTTAACATACGTAGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAGGAATTTGTAAGAAATGTTCAGAGTATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTCAACTCCCAAATCAAGCATGCAGTGGGACAGATAGTGGCAATGCATGGAGAGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGGTGA 3210 0.3953 MQKQTDFIPSYPNLPSKLICLLHNVALHADPETDEVYAQMTLQPVNQYDKEAMLASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQVGWDESTAGERPSRVSVWDIEPVVTPFYICPPPFFRPKFPRQPGMSDDESNIENAFKRAMPWIGDEFGMNDASSSFFPGLSLVQWMGMQQNNQFSAAQSGCFPSMLSSNTLQGNLGTDDPSKLLSFQAPVLSAPNLQFNKPNLPNQINQLQQPPVSWPQQQQQLQQQQQQQQLQQQQQQQQQLQQQQQQKLQSLSQIPTNQLQQQRQQQLTESQNLTLLQQQMPQQLGQQTQKHLQSSQQAITNNGVVSSNQITNQFVQQPSAYAQLQQQQLLSGSIPHQQSFQSANKNTFPLTSLPQDSQFQQRIDSQASLLQRQQQQTQLQQSQLQVLQQNMPQRVPPNPPVTQTSQQNASEQQLHMQFLHKLQQQQQLLSTSSPLLQSQLLQQQNTHQQIQQLPQLPTSQHHTQQLSNNAFSTEKLLNSNNLSSSSLMQSQHLPVNRTQNTQKPLTITRAPSTLTDGEAPSCSTSPSTNNCPVSPPNLLKRNQQVPNMLGGCLLVEPASNMIRELQSKTDKHIKHEFANVKGSDQLKYKRTTIDQLEASSGTSYCLDPGNAQQNFPLSNFCMEGDVQSNPRNNLLFDSSFDGLMPDTMLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPNMPGCSNDVGINDTSGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKKYDELRYDLARMFGIEGQLEDPQRTDWKLTYVDHENDILLVGDDPWEEFVRNVQSIKILSSAEVQQMSLDGDLGNVQLPNQACSGTDSGNAWRGQYDDNSAASFNR 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00390 1069 MobiDBLite consensus disorder prediction 1047 1069 - -
Car07g00390 1069 Pfam AUX/IAA family 936 1028 IPR033389 -
Car07g00390 1069 Gene3D - 233 304 - -
Car07g00390 1069 SUPERFAMILY CAD & PB1 domains 956 1020 - -
Car07g00390 1069 Coils Coil 437 471 - -
Car07g00390 1069 Gene3D - 67 171 IPR015300 -
Car07g00390 1069 CDD B3_DNA 69 161 IPR003340 GO:0003677
Car07g00390 1069 ProSiteProfiles PB1 domain profile. 942 1035 IPR000270 GO:0005515
Car07g00390 1069 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1057 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car07g00390 1069 PANTHER AUXIN RESPONSE FACTOR 19 1 1057 - -
Car07g00390 1069 SMART B3_2 70 172 IPR003340 GO:0003677
Car07g00390 1069 MobiDBLite consensus disorder prediction 612 633 - -
Car07g00390 1069 SUPERFAMILY DNA-binding pseudobarrel domain 60 199 IPR015300 -
Car07g00390 1069 ProSiteProfiles B3 DNA-binding domain profile. 70 172 IPR003340 GO:0003677
Car07g00390 1069 Pfam Auxin response factor 196 278 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car07g00390 1069 MobiDBLite consensus disorder prediction 704 756 - -
Car07g00390 1069 Gene3D - 937 1031 - -
Car07g00390 1069 MobiDBLite consensus disorder prediction 414 436 - -
Car07g00390 1069 Pfam B3 DNA binding domain 70 171 IPR003340 GO:0003677
Car07g00390 1069 Coils Coil 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00390 Car-Chr7 3409921 3417100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00390 1 430 B3 DNA Binding Superfamily AT1G19220 81.395 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car07g00390 AUX_IAA 1.3e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00390 K14486 - gmx:100816054 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00390 07 3409921 3417100 Car07g00390 07 3409921 3417100 ECH
Car07g00390 07 3409921 3417100 Car01g01285 01 17261722 17269719 PCT