Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00389 ATGGCGACTACCCAACTCACTGCATCATCTATTTCTACGAGGAGCCTTTCATCCTTTGAAGGATTTCGAACTTCGGCAATTCAATTTCCTCGTAAGCATGCTGCAATTGGCATTCACACACAAAGGTCGTTCCCTTCTCTGGTTGTCAAAGCTGCCACTGTTGTCGCTCCCAAGCATACCACTGTCAAGCCACTAGGTGATAGAGTACTGGTAAAAATTAAGGATGCCGAAGAGAAAACTCAGGGTGGAATTTTATTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTGGTTTCTGTTGGAGAAGGGAAGTCAATTGGGAAGAACAAAGTGGAGATTAGTGTGAAGGCAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGAACTGAGGTGGAGTTCAATGGTACAAAACATCTTATATTGAAGGATGACGACATCATTGGTATCCTTGAAACCGATGAGGTCAAGGATCTTAAACCCTTGAATGATAGAGTATTGATAAAGGTTGCAGATGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCCATTGGAACCGTGATAGCAGTTGGTCCAGGGTCTGTGGATGAGGAAGGTAACAGAAAACCATTATCCATTACATCTGGGAATACAGTTCTGTACTCAAAATATGCGGGGAATGACTTCAAGGGCAAAGATGGTTCTAACTATATTGCTTTGAGAGCCTCAGATGTCATGGCTATCCTCTCTTAG 762 0.4396 MATTQLTASSISTRSLSSFEGFRTSAIQFPRKHAAIGIHTQRSFPSLVVKAATVVAPKHTTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVSVGEGKSIGKNKVEISVKAGAQVVYSKYAGTEVEFNGTKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVADAEEKTAGGLLLTEATKEKPSIGTVIAVGPGSVDEEGNRKPLSITSGNTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00389 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Car07g00389 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 PANTHER GROES CHAPERONIN 1 253 - -
Car07g00389 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 CDD cpn10 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Car07g00389 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Car07g00389 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Car07g00389 253 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Car07g00389 253 Gene3D GroES chaperonin 156 253 IPR037124 GO:0006457
Car07g00389 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Car07g00389 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00389 Car-Chr7 3406789 3409703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00389 1 253 Calmodulin-binding Proteins AT5G20720 75.294 4.70e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00389 K04078 - gmx:100804915 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00389 07 3406789 3409703 Car07g00389 07 3406789 3409703 ECH
Car07g00389 07 3406789 3409703 Car01g01284 01 17253610 17256976 PCT