Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00386 ATGCAGCCACTTAAATTAAGGCAAAATCCCATGATGCAGCATTCTCTCTACCATCACCCAGCTCTTATTACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACTTGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAACCCCTTCTTCAAGAGCTTTTTTCAAGTGCTGGCGCCCTTGAAGGGTGCAAGCTTATTCGGAAAGAGAAGTCATCATATGGCTTCGTGGACTACTTTGATCGCAGTTCAGCTGCAATTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGACAGTCTATCAAAGTTAACTGGGCTTATGCTCGCGGCCAGAGAGAAGACACATCAGGCCACTTTCATATTTTTGTTGGCGACCTTAGCCCCGAGGTTACAGATGCAACTCTGTACGCTTGCTTCTCTGTGTATTCGAGTTGTTCAGATGCAAGGGTAATGTGGGATCAAAAGACAGGCCGATCCAGGGGTTTTGGATTTGTTTCTTTTCGAAATCAGCAGGATGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTCGGAAGTAGACAAATTCGTTGTAATTGGGCCACCAAAGGAGCTAATACCAACGATGAAAACCAAGGTTCAGATTCCAAAAGTGTTCTGGAGTTAACTAGTGGAACGTCAGAAGAAGGGCAGGAAATAACCATTGATGATGGTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCACCAGAGGTTACTTCTGTTGATCTCCATCAACATTTTCATACCCTCGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACTCATGGTGAAGCAGCTCTTGCTATACAGATGGGCAATGCTCGTTTTCTGTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCCGGAACAGCCTCTACTCCTCTTCCCCCACCAACTTCTTCGCATGTACCAGTGTCAGGGTTTTCATTTGCCGGCCTTGCAGCGTATGAACGCCAGATGGCTTTGAGCAAAATGAATGGTGCACATGCTGCCCTTCTGCAACAGCAGGGTCACCATGCTGCTCTAAAGCAGGCGGCAGCCATGGGAATGGGTGCTCTTGGGGCTGGGTATGGTGCAGGATTTCCTAATGTTGCCACCACCCAGCACCTAATGTATTATCAGTAA 1251 0.4628 MQPLKLRQNPMMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANTNDENQGSDSKSVLELTSGTSEEGQEITIDDGPEKNPQYTTVYVGNLAPEVTSVDLHQHFHTLGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPTSSHVPVSGFSFAGLAAYERQMALSKMNGAHAALLQQQGHHAALKQAAAMGMGALGAGYGAGFPNVATTQHLMYYQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00386 416 SMART rrm1_1 132 205 IPR000504 GO:0003723
Car07g00386 416 SMART rrm1_1 253 322 IPR000504 GO:0003723
Car07g00386 416 SMART rrm1_1 47 116 IPR000504 GO:0003723
Car07g00386 416 SUPERFAMILY RNA-binding domain, RBD 126 219 IPR035979 GO:0003676
Car07g00386 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Car07g00386 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Car07g00386 416 CDD RRM1_TIA1_like 48 118 - -
Car07g00386 416 Gene3D - 231 330 IPR012677 -
Car07g00386 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Car07g00386 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Car07g00386 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Car07g00386 416 Gene3D - 129 226 IPR012677 -
Car07g00386 416 Gene3D - 7 128 IPR012677 -
Car07g00386 416 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Car07g00386 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Car07g00386 416 SUPERFAMILY RNA-binding domain, RBD 245 331 IPR035979 GO:0003676
Car07g00386 416 MobiDBLite consensus disorder prediction 210 247 - -
Car07g00386 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 411 - -
Car07g00386 416 MobiDBLite consensus disorder prediction 210 237 - -
Car07g00386 416 CDD RRM3_TIA1_like 252 326 - -
Car07g00386 416 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 8 411 - -
Car07g00386 416 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00386 Car-Chr7 3388761 3393562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00386 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 31.186 2.35e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00386 K13201 - gmx:100813736 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00386 07 3388761 3393562 Car07g00386 07 3388761 3393562 ECH