Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00385 ATGTCAAGCTCATCGGAAAATTCTGGATTTTCCGGCCATAAACCGGCAAAGTTGCCGGAGAAATCTAACTTTTCTCATACATGTAATCTACTAAGCCAATACATCAAGGAAAACGGAAGTTTTGGAGGCCTTACCCTCGGAAAGCCATGCACCGTCGAAACAAATGGATCACCTGAGACATCTTGTAACTCTGGAACAACAATGGAGTTGTTTCCTACAAACATGACACCACAAACACAAAACCTTAAAACTTTGAATCTGTTATCCCCAAATGATGTTCCTGCCTTGGAAAACTCAAGTGTATTTAAGGAGCCTAAAACTGCACAATTGACGATGTTTTATGGTGGAAAAATTATTGTATTGGATGAGTTTCCTGCTAACAAAGTGGAAGAGTTAATATCATTTGCTAGAACCACAAAGTGGAGTACATATGCTTCTTACAATCAGACTCAGCCTTCAGTTATTCCTAATCTGTTCCCTCAAGCACCTTCAAGACTAATTGTTTGTGAACAACCAATTGCTAGAAAAGCTTCACTTCATCGGTTTCTGGAGAAAAGGAAAGATAGAATAGCTGCCAAAGCACCATATCAAAAAAGCAATCCCATATCTGCTCCAGTAAAGCCTGTTAAATCCATTCCATGGCTTGGATTAGGTGCTACATCAACGCAAGTTTAA 675 0.3941 MSSSSENSGFSGHKPAKLPEKSNFSHTCNLLSQYIKENGSFGGLTLGKPCTVETNGSPETSCNSGTTMELFPTNMTPQTQNLKTLNLLSPNDVPALENSSVFKEPKTAQLTMFYGGKIIVLDEFPANKVEELISFARTTKWSTYASYNQTQPSVIPNLFPQAPSRLIVCEQPIARKASLHRFLEKRKDRIAAKAPYQKSNPISAPVKPVKSIPWLGLGATSTQV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00385 224 Pfam Jas motif 172 197 IPR018467 -
Car07g00385 224 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 218 IPR040390 -
Car07g00385 224 SMART tify_2 103 138 IPR010399 -
Car07g00385 224 Pfam tify domain 104 136 IPR010399 -
Car07g00385 224 ProSiteProfiles Tify domain profile. 103 138 IPR010399 -
Car07g00385 224 PANTHER PROTEIN TIFY 10A 18 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00385 Car-Chr7 3384868 3387010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00385 1 219 Tify Gene Family AT1G19180 40.079 1.29e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Car07g00385 tify 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00385 K13464 - gmx:100802800 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00385 07 3384868 3387010 Car07g00385 07 3384868 3387010 ECH
Car07g00385 07 3384868 3387010 Car01g01274 01 16902819 16905838 PCT