Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00330 ATGGCGGTGGTTGACGGTGGATACGACGGTGGATACGACGGTGAAATCGGTGGGTGTAGGTCTTGCCTAATCCCACCGGTAAAACGAGAGTTATTAGATGACAGTGCAGCTTCAATTAGTTCTTATGCATACGACGACGTTTTAAGCGAAAGGAAAGATTCAGTAGTAACTGAAGAAGAAGGTGCTACTCCAACTCCCGCAATTCACATAAAAGAAGAAATTTTCGACGACGACGGTGCTAATGCATCTTCGTCAATGAAGTTTCCAAAACCAATGGAAGGGTTGCATGAGGTGGGTCCACCACCTTTTCTTAAGAAGACATTTGAAATGGTGGAGGATCCGGAAACCGACCCGATTGTTTCGTGGAGCGCGGCTCGCGATAGTTTCATTGTTTGGGACTCTCATGAATTCTCCAAAATTCTTCTTCCAAAGTACTTTAAACACAACAATTTCTCTAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGGTAGATTCAGATCGTTGGGAGTTTGCAAATGAAGGATTTCAAGGAGGGAAGAAGCATCTCTTAAAGAACATAAGAAGGAGAAGTAAGTATAACAAACTACATCAAGGAGGATTCAATTTGATGAAGCCTAGTGTTGAATCTGAAGTGGAGAAACTGAAGAAAGATCAAAACATGTTGAAAGTAGAAATTCTGAAGTTAAGGCAGCAACAAGAGAATTCGAACATTCAACTCACGAATGTTCAAGAGCGGGTTCGACGCGCAGAATTGAAGCAATATCAGATGATATTTTTCCTCACAAAAATGGCCAAAAGGCCATTGTTTATGGAACAGTTAATCCAAAAGATGAAGCGGAAAAAAGAGGTTGATGGTACTATAGACAGTGTTAAAAGACCTAGATTGCTTGGAACACAAGTCACTAATGTTGAACAATTTGCTACTTTGCAATCTGAATTGAATGGACTTTTTTCTGAAAATTTGAACACTGAAAAAATGGAACCACCAGTTTCAACTTCTATGGAAGATGGATTGTGTAGTTCCTTACATGAATTTAGGGCATATGGTTCTAGACAAAATGTGCAAGATGTATCTTCTGCTTATCATGTTATGTCAGAAAAATTATTGGGGGAAAATTCTGTTGTTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAACAGATTGGATTGGATCTGCAAGTGGATTGGTGGGACAAACAAGTTGA 1248 0.3958 MAVVDGGYDGGYDGEIGGCRSCLIPPVKRELLDDSAASISSYAYDDVLSERKDSVVTEEEGATPTPAIHIKEEIFDDDGANASSSMKFPKPMEGLHEVGPPPFLKKTFEMVEDPETDPIVSWSAARDSFIVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGGFNLMKPSVESEVEKLKKDQNMLKVEILKLRQQQENSNIQLTNVQERVRRAELKQYQMIFFLTKMAKRPLFMEQLIQKMKRKKEVDGTIDSVKRPRLLGTQVTNVEQFATLQSELNGLFSENLNTEKMEPPVSTSMEDGLCSSLHEFRAYGSRQNVQDVSSAYHVMSEKLLGENSVVDEEMDVNDSNIYLELEDLISKPTDWIGSASGLVGQTS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00330 415 Coils Coil 214 255 - -
Car07g00330 415 ProSitePatterns HSF-type DNA-binding domain signature. 142 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g00330 415 SUPERFAMILY "Winged helix" DNA-binding domain 99 192 IPR036390 -
Car07g00330 415 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 83 399 IPR027725 -
Car07g00330 415 Pfam HSF-type DNA-binding 103 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g00330 415 PRINTS Heat shock factor (HSF) domain signature 103 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g00330 415 PRINTS Heat shock factor (HSF) domain signature 141 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g00330 415 PRINTS Heat shock factor (HSF) domain signature 154 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car07g00330 415 Gene3D - 96 193 IPR036388 -
Car07g00330 415 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 83 399 - -
Car07g00330 415 SMART hsfneu3 99 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00330 Car-Chr7 2984905 2987359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00330 89 327 HSF AT2G26150 49.213 1.12e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car07g00330 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00330 K09419 - gmx:100818430 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00330 07 2984905 2987359 Car07g00330 07 2984905 2987359 ECH