Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00266 ATGGACTCTTCCTCTTCTTCACCTCCCAACACCCTTGctttctctctttccaatcactttcctatcccttctccttctcactctcatctttctcttttccactccttcaccacctatcctccctcaacaccttctctcaccctcacagGAAGCAACACCGTCGAACCATCGCCGGAGGCAAAAGCAACCAACGGAGGAACAACCAACCTCTCCATATTCACCGGCGAACACAAGTTTGAAGACTTTTTAGGAAGCTCCGTCGCAACAACGAGAAGCACCGCCTCCACGTGTGCACCTACACAACTTCCTCAGTTTTCCTCGGACAGCGACCTATATGATTCGGAGCTTAAGAAAACAATAGCCGCTTGCTTCCCTCGTGGCTTCACAACCGAACCTAACTCCGTACCTCAAAAGCCTTCCCCCAAAAAAACCGTCGATACCTTCGGCCAACGTACCTCCATATACCGCGGTGTCACTCGACATAGATGGACGGGGAGATATGAAGCACATCTATGGGATAATAGTTGCAGAAGGGAAGGACAAAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAAGAAGATAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACTACTAACTTTCCAACTTCCAACTATGAGAAGGAGCTTGAGGAAATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTTTCAAGAGGGGCATCTATTTACAGAGGAGTAACAAGACACCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTTGCTGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCGTATGATATAGCAGCTATAAAATTCAGAGGACTAAATGCAGTGACAAACTTCGACATGAGTCGTTACGACGTAAAAAGCATTGCAAATACTTCACTTCCCATAGGAGGCTTATCAAACAAGAACAAAAATCCAACTGATTCTGTTTCTGAATCCAAATGCCACCAAGAAGCAAGTAAATCAGATGAAAGAAATCCATCTTCATCTACAACAACAACAACCTTTACATTATCACAACAACCTTCATCAACTTCTACTACCTTAAACTTTGCTTTACCTATTAAACAAGACCCTTCTTCAGATTACTGGTCCATTCTCGGATTCCACAATAATAATCATAGTGTTGTTGTTCCATCTGCAAATAACCATAACACACCCTTCAACATGGATTTTTCTGTTGCACCCTCAAATACCAACAATGCTATGTTTTTCAGTGGATCAACTAACTTTGTTCAGCAACAAAATGGAAATGGAAGTGGAAGTAGTGGTGGttcttcttcttcttcttcttcAACAAGTTCAATACCATTTGCAACACCAATATTTTCTTTAAATAGTAATAATACTAGTTATGAGAATGGTAGTAATTATGGAAATTGGATTGGAGTTGGACCTAGCTTGCACACATTTCAAACACATGCAAAACCAAGTCTTTTTCAAACGCCAATATTTGGAATGGAATGA 1569 0.3875 MDSSSSSPPNTLAFSLSNHFPIPSPSHSHLSLFHSFTTYPPSTPSLTLTGSNTVEPSPEAKATNGGTTNLSIFTGEHKFEDFLGSSVATTRSTASTCAPTQLPQFSSDSDLYDSELKKTIAACFPRGFTTEPNSVPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPTSNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANTSLPIGGLSNKNKNPTDSVSESKCHQEASKSDERNPSSSTTTTTFTLSQQPSSTSTTLNFALPIKQDPSSDYWSILGFHNNNHSVVVPSANNHNTPFNMDFSVAPSNTNNAMFFSGSTNFVQQQNGNGSGSSGGSSSSSSSTSSIPFATPIFSLNSNNTSYENGSNYGNWIGVGPSLHTFQTHAKPSLFQTPIFGME 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00266 522 SUPERFAMILY DNA-binding domain 153 222 IPR016177 GO:0003677
Car07g00266 522 ProSiteProfiles AP2/ERF domain profile. 154 220 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 ProSiteProfiles AP2/ERF domain profile. 256 314 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 MobiDBLite consensus disorder prediction 444 466 - -
Car07g00266 522 MobiDBLite consensus disorder prediction 343 357 - -
Car07g00266 522 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 Pfam AP2 domain 154 212 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 SUPERFAMILY DNA-binding domain 255 316 IPR016177 GO:0003677
Car07g00266 522 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 468 - -
Car07g00266 522 MobiDBLite consensus disorder prediction 358 379 - -
Car07g00266 522 MobiDBLite consensus disorder prediction 48 67 - -
Car07g00266 522 MobiDBLite consensus disorder prediction 329 379 - -
Car07g00266 522 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 63 468 - -
Car07g00266 522 CDD AP2 153 222 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 SMART rav1_2 154 226 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 SMART rav1_2 256 320 IPR001471 GO:0003700|GO:0006355
Car07g00266 522 Gene3D AP2/ERF domain 256 316 IPR036955 GO:0003700|GO:0006355
Car07g00266 522 Gene3D AP2/ERF domain 154 222 IPR036955 GO:0003700|GO:0006355
Car07g00266 522 CDD AP2 255 316 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00266 Car-Chr7 2387907 2392147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00266 107 522 AP2-EREBP Transcription Factor Family AT5G57390 57.273 3.54e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Car07g00266 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00266 K09285 - gmx:100797828 701.819