Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00238 ATGGGTAGAGCTCCATGTTGTGACAAGGCTAATGTGAAGAAAGGACCTTGGTCTCCAGAAGAGGATGCTACCCTCAAATCTTACATTGAAAAAAATGGAACCGGGGGAAATTGGATTGCTCTTCCCCAAAAAGTTGGACTCAAGAGATGTGGAAAGAGTTGCAGACTAAGGTGGTTAAATTACTTGAGGCCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAATTACCTGGAAGGACTGATAATGACATCAAGAACTATTGGAACACAAGATTGAAGAAGAAGTTACTTGGGAAGAGAAAACAATCAAATAATAATAGTAGTTTGAACCAAAAGGACACAAATGGAAATATAGAAGAAAATTCACTAAGCAATTCAGCTCTTGAAAGACTCCAACTTCATATGCAACTTCAAAACCCTTTCTCTAATTTCTACCCTTCACTCATGTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAACCCTACAAGCTTTGAATCATCCTCATCATGATAATAACCCTATCATGCAAAATTCTTTCATGACATCCTCATACAAACCTTCTAATGATGTTATTCAACAAGATGGTGCAAAGATCAATAGAAATGATCCACAAGTTGATATTTTGGTGGAGGAGAATATTATTCCTTTGaattataataatagtaataattataatTCAATGATCAACTCAAGTCTTGTAGCACCAAGAGGAGAAGCTATTGAGAAGAGAACTAATGAAGGAATTCAACAACTTGGTGCAATGCAAAATGAACTAGATGACATTCTCAACAATAGAATGGATTACTTACAAAAGGAGGAAGATGAATTTGATTGTTTTAGAGAAATGAATGTTTCAAAGGAAAGCTTGATATGGTGGTCAAATGATTCTGATACTAAATCAGGATCCTCAAACTCATGGGATTCATCAAATAATCATCAAGTTCTTATGCAAGATCAAGGGATGTTTCAAGATTATGTACTAGGTTACAGTATGTAG 1068 0.3549 MGRAPCCDKANVKKGPWSPEEDATLKSYIEKNGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNNNSSLNQKDTNGNIEENSLSNSALERLQLHMQLQNPFSNFYPSLMWPKLHPSQEKMIQTLQALNHPHHDNNPIMQNSFMTSSYKPSNDVIQQDGAKINRNDPQVDILVEENIIPLNYNNSNNYNSMINSSLVAPRGEAIEKRTNEGIQQLGAMQNELDDILNNRMDYLQKEEDEFDCFREMNVSKESLIWWSNDSDTKSGSSNSWDSSNNHQVLMQDQGMFQDYVLGYSM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00238 355 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Car07g00238 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Car07g00238 355 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car07g00238 355 CDD SANT 16 62 IPR001005 -
Car07g00238 355 CDD SANT 71 111 IPR001005 -
Car07g00238 355 Gene3D - 70 144 - -
Car07g00238 355 Gene3D - 7 68 - -
Car07g00238 355 SMART sant 13 64 IPR001005 -
Car07g00238 355 SMART sant 67 115 IPR001005 -
Car07g00238 355 MobiDBLite consensus disorder prediction 119 141 - -
Car07g00238 355 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Car07g00238 355 MobiDBLite consensus disorder prediction 122 141 - -
Car07g00238 355 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Car07g00238 355 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Car07g00238 355 PANTHER OS09G0431300 PROTEIN 1 311 - -
Car07g00238 355 PANTHER OS09G0431300 PROTEIN 1 311 - -
Car07g00238 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00238 Car-Chr7 2115872 2117567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00238 1 176 MYB Transcription Factor Family AT5G57620 76.344 3.59e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car07g00238 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00238 K09422 - gmx:778083 434.491