Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00229 ATGGGTATCGAAAGAGGAGGAGGAGGTGGACTCAAGGGTTTTAGAAGCGGCTGGAGTGTGCCACCTAAGCTATGCGATTCTTGCAAACTGTCTTCTGCCGCGCTTTTTTGCCGTTCTCATTCCGCGTTTCTATGTATCAATTGCGATTCCAGGATTCACTGTGCTAACAAGCTGTCTTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTATGCGAACAAGCACCTGCATCCGTCACGTGCAAAGCTGACGCCGCTGCTCTCTGCGTCACGTGCGATTCTGATATCCACTCCGCCAACCCCCTCGCCCGCCGTCACGAACGTGTCCCCGTCGAACCTTTCTTCGACTCTGCCGAATCCGTCGTCAACTCCTCCACAGCCGCCACCGCCGGTGCATTCAATTTCGCCGTCCCAACCGACGATTGTTTCAGCCAAGACGACGCCGAAGCAGCCGCGTGGCTCATTCCGAACCCTAATTTCACATCCAAGCTCACGGAAGCACCAGATATCAAAACTAGAGACATGTTCTTCTCCGATATGGATCCATTTATCGATTTCGATTACTCAAACACATTCCAGAATAACAACAATTGTAGTAGCGCTATAAACGACAGCGTCGTTCCGGTTCAAACCAAACCAACTCCGGCGCCGATGATGAATCATAACTCAGAAAGTTGCTTCGACATCGATTTTTGTAGATCGAAGCTATCTTCGTTTAACTATCCAGCACAGTCTATTAGCCAAAGCCAGGTTTCGTCTTCTTCGCTTGATGTTGGAGTGGTGCCAGATGGAAACGCGGTGCCGGAGATGTCATACTCGTTCGGTAGGAACAGTTCTGAATCGAGTGGAATGGTGTCCGGGGGTGTGAATAGTCAACAAGGGGTGCAAGTAGCAACTCAATTGTGTGGAATGGATCGTGAAGCGAGGGTTCTAAGGTACAGAGAGAAGAGGAAGAATCGTAAATTCGAGAAAACTATTCGATATGCTTCGAGAAAGGCATATGCAGAAACCCGGCCCAGAATTAAAGGACGGTTCGCTAAACGAACCGAAATTGACTCGGAAGTGGACCGTCTCTATGACCCTATTGAAATCGATCATCTCACTGTCCCTTCATCTCTCCTTATCGACTCTCCATACGGCGTCGTTCCAACGTTTTAG 1155 0.4987 MGIERGGGGGLKGFRSGWSVPPKLCDSCKLSSAALFCRSHSAFLCINCDSRIHCANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVNSSTAATAGAFNFAVPTDDCFSQDDAEAAAWLIPNPNFTSKLTEAPDIKTRDMFFSDMDPFIDFDYSNTFQNNNNCSSAINDSVVPVQTKPTPAPMMNHNSESCFDIDFCRSKLSSFNYPAQSISQSQVSSSSLDVGVVPDGNAVPEMSYSFGRNSSESSGMVSGGVNSQQGVQVATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSEVDRLYDPIEIDHLTVPSSLLIDSPYGVVPTF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00229 384 CDD Bbox1_BBX-like 24 67 - -
Car07g00229 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 12 384 - -
Car07g00229 384 Pfam B-box zinc finger 65 110 IPR000315 GO:0008270
Car07g00229 384 ProSiteProfiles Zinc finger B-box type profile. 20 67 IPR000315 GO:0008270
Car07g00229 384 SMART bboxneu5 68 110 IPR000315 GO:0008270
Car07g00229 384 SMART bboxneu5 20 67 IPR000315 GO:0008270
Car07g00229 384 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Car07g00229 384 CDD Bbox1_BBX-like 68 110 - -
Car07g00229 384 Pfam CCT motif 305 347 IPR010402 GO:0005515
Car07g00229 384 ProSiteProfiles Zinc finger B-box type profile. 63 110 IPR000315 GO:0008270
Car07g00229 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 384 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00229 Car-Chr7 2046683 2048416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00229 8 384 C2C2-CO-like Transcription Factor Family AT5G57660 52.713 6.93e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car07g00229 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00229 - - cam:101510742 732.25