LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car07g00221	ATGCTTTCGAGATCTTGTTTGGGTTTATTAAATCACGTATCAGTGAATAATTACGAAAACCTAAGCAACGTTCCAAACGTTATGTCGGTAAGCGAAGAAGATTTACCAAAAACGAATAACAACGTTTTAGTTTCTTCTTCTTCGCCTTTTTTGAGTGAACGAAGAAGAATGATAATAGTGACGAATCAGTTACCAATAAAAGTTTCAAACGAAGGTCAAAAGTGGAATTTCGAATGGGATTTTGACACCATAGCTTTTCAGCTAAAAGACGGTTTCTCTTCAAACGTTGAAGTTTTATACGTTGGTTCGTTAAAAACAGAGATCGAAGTTTTCGAACAAGATGAAGTTTCTCAGGTACTGTTTGAAAAGTTTCGCTGTGTTCCAACTTTTTTACCTTCAGATATTCACAACAAATTCTACCATGGTTTTTGTAAGCATTATCTATGGCCTCTTTTTCACTACATGCTTCCTGTGTCAAAGAGTCAAGGATCACGTTTCGATCGTTCTCAATGGCTTGCTTATGTTTCAGCGAATCGAATATTCGCTGACAAGGTTACTGAGGTTATCAACCCTGACGAGGATTATGTTTGGGTTCACGATTATCATCTTATGATTTTGCCAACTTTTTTGAGGAAGCGTTTTCCTCGTGTGAAATTGGGTTTCTTTCTTCACAACACTTTTCCCAGTTCGGAAATTTATCGAACAATTCCTGTGCGTGAGGAAATTCTAAGAGGTTTTTTGAATTGTGATTTAATTGGGTTTCATACTTTTGATTATGCGAGACATTTTTTGTCTTGTTGTAGTAGGATGTTGGGTTTGGATTATGAGTCTAAAAGAGGTTACATTGGACTTGATTACTTTGGTAGAACCGTGACCGTGAAGATTTTACCTGTTGGGATTCATATGGGTCTTCTTCAATCGGTTTTGTCGTTGAATCAGACTTGTAAGAGGGTTTTGGAGTTGAAGGAAGAGTTTGAAGGGAAGGTTGTGATGTTAGGTGTTGATGATGTGGATCTGTTTAAAGGTATTGGATTGAAGTTTTTGGCTTTAGGTAAGCTTTTGGAGCAGCATGAGAAATTAAGGGGTAAGGTTGTTTTGGTTCAGATTTTGAATCCAGCTAGGAGCAGAGGGAAAGATATTCAAGACGTGAAGAGTGAGATTGAAGCTATTGCTAAAGAGATTAATGGTAAATATGGTGATGATAAAGATAACTACAAGCCAATTGTTTGTATAAAGGGTCCGGTTTCGACTCAGGAGAAGGTTGCATACTATGCGATATCGGAATGTTGTATTGTGAATGCTGTGAGGGATGGAATGAATTTGATGCCTTATGAGTATACTGTTTGTAGACAAGGAAGTGTTGAATTGGATAAAGCACTTGGATTGGAAAAAGATGAGGCTAAAAAGAGTGTTATCATTGTTTCTGAGTTCATTGGTTGTTCGCCTTCGCTCAGCGGTGCGATTCGTGTGAATCCTTGGAACATTGATGATGTTTCTGAGGCAATGAACTTGTCAACCAGAATGGTGGATTCTGAGAAGTGTTTGCGACACGAAAAGAATTATAAGTACATAAGCTCTCATGATGTAGCTTATTGGGCTAAGAGTTTTGATCAGGATTTAGAGAGAGCTTGCAGGGAGCATTATATCAACAAGTGGTTGGTTGTTGGTTTAGGACTTAATTTCAGAATCATTGCTTTGGATCCTACTTTTAAGAAGCTTTGTGTTGATGACATTGTTTATCCTTATAGAGATACAAAGAGTAGGTTGATTCTTTTGGATTATGATGGAACCATGATGCCTCAGGACACATTAGACAAGGCTCCAAGCTCAGATGTTATCTCTCTCTTGAATTGCTTATGCAGTGATCATAGAAACATAGTGTTCATTGTTAGTGGCAGAGATAGAGATTGTcttagcaagtggttttctccttgtgacaaacttggtctatctgcagaacatggttacttcactagGTGGAGTAAGGATTCTCCTTGGAAGACATGTGGATTGGCATCAgattttgattggaaaaatattgttgaaccggtgatggcgctttatacagaagcaactgatggttccttcattgaacaaaaggaaagtgcaatggtttggcaacatcaagaagcagatcctgattttggatcatgtcaagccaaggagcttcttgatcaccttgagagtgtgcttgctaatgagcctgtagtagtcaaaaggggacagcatattgttgaagtaaagcctcagggtgtgagcaaaggtatagtggtagaagaccttatatcaagcatgaggaatgaagggaagtcaccagattttctgctatgcataggagatgatagatcagatgaagatatgtttgaaagcattgctaatttagcattgccacatatatcacaagtgtttgcctgcactgttggtcagaaaccaagtagagctaaatactatttggatgatactgctgatgttatcacactgctcCAAGGACTTGTTGATGCATCAGCAGATTAA	2514	0.2991	MLSRSCLGLLNHVSVNNYENLSNVPNVMSVSEEDLPKTNNNVLVSSSSPFLSERRRMIIVTNQLPIKVSNEGQKWNFEWDFDTIAFQLKDGFSSNVEVLYVGSLKTEIEVFEQDEVSQVLFEKFRCVPTFLPSDIHNKFYHGFCKHYLWPLFHYMLPVSKSQGSRFDRSQWLAYVSANRIFADKVTEVINPDEDYVWVHDYHLMILPTFLRKRFPRVKLGFFLHNTFPSSEIYRTIPVREEILRGFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYFGRTVTVKILPVGIHMGLLQSVLSLNQTCKRVLELKEEFEGKVVMLGVDDVDLFKGIGLKFLALGKLLEQHEKLRGKVVLVQILNPARSRGKDIQDVKSEIEAIAKEINGKYGDDKDNYKPIVCIKGPVSTQEKVAYYAISECCIVNAVRDGMNLMPYEYTVCRQGSVELDKALGLEKDEAKKSVIIVSEFIGCSPSLSGAIRVNPWNIDDVSEAMNLSTRMVDSEKCLRHEKNYKYISSHDVAYWAKSFDQDLERACREHYINKWLVVGLGLNFRIIALDPTFKKLCVDDIVYPYRDTKSRLILLDYDGTMMPQDTLDKAPSSDVISLLNCLCSDHRNIVFIVSGRDRDCLSKWFSPCDKLGLSAEHGYFTRWSKDSPWKTCGLASDFDWKNIVEPVMALYTEATDGSFIEQKESAMVWQHQEADPDFGSCQAKELLDHLESVLANEPVVVKRGQHIVEVKPQGVSKGIVVEDLISSMRNEGKSPDFLLCIGDDRSDEDMFESIANLALPHISQVFACTVGQKPSRAKYYLDDTADVITLLQGLVDASAD	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car07g00221	837	SUPERFAMILY	HAD-like	588	832	IPR036412	-
	Car07g00221	837	Gene3D	-	717	837	IPR023214	-
	Car07g00221	837	Gene3D	-	587	705	IPR023214	-
	Car07g00221	837	Gene3D	Glycogen Phosphorylase B;	308	525	-	-
	Car07g00221	837	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	836	-	-
	Car07g00221	837	CDD	GT20_TPS	56	541	IPR001830	GO:0003824\|GO:0005992
	Car07g00221	837	TIGRFAM	T6PP: trehalose-phosphatase	586	832	IPR003337	GO:0003824\|GO:0005992
	Car07g00221	837	CDD	HAD_TPP	589	824	-	-
	Car07g00221	837	Pfam	Trehalose-phosphatase	591	821	IPR003337	GO:0003824\|GO:0005992
	Car07g00221	837	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	56	545	-	-
	Car07g00221	837	Gene3D	Glycogen Phosphorylase B;	49	307	-	-
	Car07g00221	837	Pfam	Glycosyltransferase family 20	56	541	IPR001830	GO:0003824\|GO:0005992
	Car07g00221	837	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	836	IPR001830	GO:0003824\|GO:0005992
	Car07g00221	837	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	589	790	IPR006379	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car07g00221	Car-Chr7	1917734	1921117	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car07g00221	54	835	Trehalose Biosynthesis Gene Families	AT2G18700	68.782	0.0	1142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car07g00221	K16055		-	gmx:100810498	1324.3