Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00218 ATGCCTCCTCTTCATACCCACCCCACCGATGCCCAACCTAAACCAAACCCTAATCTCCTTTCCATCTTCCTCAAACCAATCATCATGCTCCTTCTCACCTCCCTCTTCTTCCTCTTCATTGGCTTCGCTGCTTTTctcctcctcaacctcttcctcctcGCCGGTGCCCTTCACCGCCTCCGTTtccgtcccacccccaccctccctctcccatctccctccgacgctttcctccctcGTGAAATCAACAAACTCCCTAACTTTCGGGTCACTAAAGGATCCGGACCCGGACCCGATTCACGTTGCCCCGTTTGTTTGGACGGTTTTCGTAACGGACAGTGGTGTAGAAATCTCGCTAATTGCGGTCATGTTTTTCACCGTAGATGTGTTGACACGTGGCTTCTCAAAGTTGGCACGTGTCCTACTTGCCGTACACCCGTTCGATCAAACCCTAGACCTCAAGATTGTATTGTAGATGCACGGAGAGAAGAAGGTTCTTCACAATTTTGGAATTGCTCTGTTAATACTAATGCTTTGACCattttatag 549 0.408 MPPLHTHPTDAQPKPNPNLLSIFLKPIIMLLLTSLFFLFIGFAAFLLLNLFLLAGALHRLRFRPTPTLPLPSPSDAFLPREINKLPNFRVTKGSGPGPDSRCPVCLDGFRNGQWCRNLANCGHVFHRRCVDTWLLKVGTCPTCRTPVRSNPRPQDCIVDARREEGSSQFWNCSVNTNALTIL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00218 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Car07g00218 182 Pfam Ring finger domain 101 144 IPR001841 -
Car07g00218 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 174 - -
Car07g00218 182 PANTHER RING-H2 FINGER PROTEIN ATL56 6 174 - -
Car07g00218 182 SMART ring_2 102 143 IPR001841 -
Car07g00218 182 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Car07g00218 182 SUPERFAMILY RING/U-box 85 152 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00218 14 148 C3H Transcription Factor Family AT2G18670 43.382 1.64e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00218 - - pvu:PHAVU_003G150700g 175.637