Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00217 ATGGGAAGGAGTTTTGTTCAATTTAAAGGTGACACCTTTTTGCCTCCATTTGAACAACCACCAAATAATTTTAATTTTCAGCCAAACCCAAATTCACCATTTTCACCCATTATCACCTCAACTTCTAATCTTCGATCTGATAATTTCAGTTTAAATGATAACACCTTAAAGGTTAGTCCAAGTATACTTTTAATCATTATCATTTTGGCCATTGTTTTCTTCATTTCTGGTTTACTTCACCTACTAGTTAGATTCCTTTGGAGACCTCAAAGTAGAGACCATGATGATTTGGATGATGTTACTGCACTTCAAGGTCAATTGCAACAGCTTTTTCACCTTCATGATTCTGGTGTTGACCAATCTTTCATTGATACATTGCCTGTTTTCCTTTACAAAGCTATTATAGGATTGAAAAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAACTTGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGTCATGCTTTTCACATGGAGTGTATTGATACATGGTTATTGTCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTTCATGATTTTTCACCAAACAATAATTGTTCATCCATTGTTCTTCTTTTGGAATCTGGTAGTGATAGTTCTAGAGAGGTTGTTTCAGAAAGAGAGGCTAATAATGCAGGTAGTAGTGATGTTGGCATTGGAAGGACTAGTTCTGTTATGACAACAAATTCTCATCTTGGTTGCTGTGGTGACTGCGAAATCGGAGGCGATTTGGTTCCGAATATTGAAAATGCAAACATTCCTGACCCAATTGTTGGAGTTGAAGGAGATGCTGTGGATAAAGTTGTCACTGTTAAGCTTGGAAAGTTTAGGAATGTTGATGGTGTTGGTGATGGAGAAGGAAGTAGCAATAACAATATGGATGATAGAAGGTGTTTTTCAATGGGGTCATTTGCTTATATTATGGATGAAGCTTCTTCATTGCAGGTACCAATTAGGACTCCAATGAAGAAACAAATGATTAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGTCATAAGCCAGCAATGTCAGAATATGACAGTGAATCAAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAAATAGAGTTGATGATGTTGTTGTTGTTAATGCTGAAATTGGAGGTGCTATTGGAAGGAGCCAAAAAGAGAGTTTTTCTGTATCAAAGATTTGGCTTAGAGGGAAAAAGGATAAGTCAAATGTTGGGTCTTTGGTTGATTCATCTAGAAGGGCTGTTTCATTTAGGTTTCCATTACAAAGGAATGTTGGTAGTTCTACAAATGATTTGAAGAGAAAGAATGGAAGATTTGATACAAGGAGTAATGTTTCTGAGATGGAATTTGGTAAATGGGAAAATGGAGGAGGAAGTGAATTTGGCTATGATGAAGAAAATCGAAGTTGCTATAGTATGGATTCACAAGCTAGAGCACCATCTTTTGCTAAAAGGACTTTGCTTTGGCTAACAGGAAAACAGAACAAGGTTGTTCACTCATCCAATACTTCTTCCACCCTCTAG 1554 0.3642 MGRSFVQFKGDTFLPPFEQPPNNFNFQPNPNSPFSPIITSTSNLRSDNFSLNDNTLKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSRDHDDLDDVTALQGQLQQLFHLHDSGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFSPNNNCSSIVLLLESGSDSSREVVSEREANNAGSSDVGIGRTSSVMTTNSHLGCCGDCEIGGDLVPNIENANIPDPIVGVEGDAVDKVVTVKLGKFRNVDGVGDGEGSSNNNMDDRRCFSMGSFAYIMDEASSLQVPIRTPMKKQMIKKKNVLPLIPGHKPAMSEYDSESRRDFKFASFDSNRVDDVVVVNAEIGGAIGRSQKESFSVSKIWLRGKKDKSNVGSLVDSSRRAVSFRFPLQRNVGSSTNDLKRKNGRFDTRSNVSEMEFGKWENGGGSEFGYDEENRSCYSMDSQARAPSFAKRTLLWLTGKQNKVVHSSNTSSTL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00217 517 Pfam Ring finger domain 142 185 IPR001841 -
Car07g00217 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 24 441 - -
Car07g00217 517 SMART ring_2 143 184 IPR001841 -
Car07g00217 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 192 IPR013083 -
Car07g00217 517 MobiDBLite consensus disorder prediction 9 28 - -
Car07g00217 517 CDD RING-H2_PA-TM-RING 142 185 - -
Car07g00217 517 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 24 441 - -
Car07g00217 517 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Car07g00217 517 SUPERFAMILY RING/U-box 122 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00217 Car-Chr7 1882209 1884263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00217 48 513 C3H Transcription Factor Family AT2G18650 43.892 6.73e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00217 - - lja:Lj4g3v2023880.1 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00217 07 1882209 1884263 Car07g00217 07 1882209 1884263 ECH