Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00168 ATGGGTTTGGGGGTATTTGGATCTGTTCTTGTTTTAACATTTTTTTTCAAGCATTTAGCTTCTCAGCAACCAAATACTGATGAGTACTTTGTGTCTGAGTTTTTGAAGAAAATGGGTTTAACATCACCCTCCAAAGTTTACAACTTTTCTTCTTCTGATTCTGTTTGTTCATGGAAAGGAGTTTTCTGTGATGCCAAGAAAGAACATGTTTTAGAGTTGAAGTTTTCTGGTATTGGTCTCACTGGTCCTATTCCTGATACCACTTTAGGCAAACTTAGCAAGCTTCAATCTTTGGATCTTAGCTTCAACAAAATCACTGCTTTACCTTCAGATTTTTGGAGTTTGACCTCTCTCAAGAGCCTTAATCTTTCCTCCAATAAGATTTCAGGTTCATTGACTAACAACATTGGTAACTTTGGTTTACTTGAAAATGTTGACTTGTCAAACAATAGTTTCTCTGATGAAATTCCTGAAGCTTTGAGCTCACTCATGAGTTTAAGAGTTCTTAAACTTGACCACAACATGTTTGTTGGAAGATTACCTTCTGGTATTCTAAAATGTCAGTCTTTAGTTTCAATTGATGTTTCATCAAATCAGTTGAATGGAACACTTCCTAATGGTTTTGGTTCTGCTTTTCCTAAGCTTAGGAATTTGAACCTTGCTGAGAATAATATCTATGGTGGTATCTCAGATTTTTCAGGGTTAAATTCCATTGTGACTCTCAACATATCTGGTAATTCATTTCAAGGTTCTATCATGAGTGTCTTTGTGTTAAAGTTGGAGGTTTTGGACCTTCGCAGAAACCAATTTCAAGGTCACATGTCTCAGGTTGTTGAAGTTTCTACTTCAAAAACAGGAAAGCATGGACATGCTAAGTGTCACTTTGTTGCAATTGATATTTTCAACGGGAAGAAGCTTGAAGATATCGTTCCTTCATCCCACAATTGTGATGTTCCACATGTGAATCGTACTGACTATCAGCTGATTGATATCTCTGAAGATGGTTTTGTGAGTCTGTTGACTGATAATGGAAGTACCAAGGATGATCTGAAGCTTCCCACAGATGACGCCCTGCTTACTCAGATTAAAGAGGGGTTTGCTGAAGGAAAAGATCTTGTCGTTTCTGTCATGTCCGCAATGGGAGAAGAACAGATATGTTCCTTGAAGGACATTGGTCCTAAAAATTAA 1188 0.3721 MGLGVFGSVLVLTFFFKHLASQQPNTDEYFVSEFLKKMGLTSPSKVYNFSSSDSVCSWKGVFCDAKKEHVLELKFSGIGLTGPIPDTTLGKLSKLQSLDLSFNKITALPSDFWSLTSLKSLNLSSNKISGSLTNNIGNFGLLENVDLSNNSFSDEIPEALSSLMSLRVLKLDHNMFVGRLPSGILKCQSLVSIDVSSNQLNGTLPNGFGSAFPKLRNLNLAENNIYGGISDFSGLNSIVTLNISGNSFQGSIMSVFVLKLEVLDLRRNQFQGHMSQVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDALLTQIKEGFAEGKDLVVSVMSAMGEEQICSLKDIGPKN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00168 395 Gene3D Ribonuclease Inhibitor 33 183 IPR032675 -
Car07g00168 395 Gene3D - 261 320 IPR014722 -
Car07g00168 395 SMART eIF_5a_2 320 389 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car07g00168 395 TIGRFAM eIF_5A: translation elongation factor IF5A 260 389 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Car07g00168 395 SUPERFAMILY Translation proteins SH3-like domain 264 328 IPR008991 -
Car07g00168 395 PRINTS Leucine-rich repeat signature 95 108 - -
Car07g00168 395 PRINTS Leucine-rich repeat signature 115 128 - -
Car07g00168 395 SUPERFAMILY L domain-like 53 274 - -
Car07g00168 395 SMART LRR_typ_2 115 139 IPR003591 -
Car07g00168 395 SMART LRR_typ_2 92 114 IPR003591 -
Car07g00168 395 SMART LRR_typ_2 163 187 IPR003591 -
Car07g00168 395 SUPERFAMILY Nucleic acid-binding proteins 321 391 IPR012340 -
Car07g00168 395 CDD S1_eIF5A 321 391 - -
Car07g00168 395 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Car07g00168 395 PANTHER OS06G0301201 PROTEIN 1 281 - -
Car07g00168 395 Pfam Leucine rich repeat 84 128 IPR001611 GO:0005515
Car07g00168 395 Pfam Leucine rich repeat 189 247 IPR001611 GO:0005515
Car07g00168 395 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 281 - -
Car07g00168 395 Gene3D - 321 394 IPR012340 -
Car07g00168 395 Gene3D Ribonuclease Inhibitor 184 257 IPR032675 -
Car07g00168 395 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 285 292 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car07g00168 395 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 320 389 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00168 Car-Chr7 1464955 1471481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00168 270 394 Eukaryotic Initiation Factors Gene Family AT1G69410 85.600 1.37e-74 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00168 - - gmx:100787157 410.994