Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00159 ATGCACCCTTGTAGCAGAGAAATGCAATCCCTTAACTCCCTCTTAAACTCTCCTCCTTCTCAAATTCCAATTCCTCTTCAAAATCATTCTCAGATCCAAATTAACCACGACACATTCCATCAATCTCACAATTCTCACGATGATTTTCTCAAGCAAATCCTCTCCACCCTTCCTTCATCCTCTTCTTGGAATAATCTTGACCCTACCAACTCCAACCCTAAACCTTTATGGGACTCCAATTCCGATGAAACCCCTCTTTCCGACAATGTCCATTTCCCTAATTACGACGAACACACCAACCTCGCCTCTAAATTTCGTAACCACCAGATCAACGACAAAGCCGCCGCTCTCATGCTTCTCAGAGGTGCCGATTCCGGACTCCTCCAGATGCCGTTGAACCCCGCTGACTTTGACTCCTCTCAAAACGACGTCGTTGACGCTTCTTCTGTTCAAGCTCTCTATAATGGTTTCTCTGGATCTCTCCACGGTATCGCCCAAAACAACACAAATCATCATTTTCAAGGACAGGGTTTTGGAGGTTCAGTGAGTGCAACCAACCAGGCTCCGGCGAGTGGAACGCCGGGACAGCCGAGGCAGAAGATTAGAGCTAGGAGAGGCCAAGCCACTGACCCGCACAGCATCGCCGAAAGGTTACGGAGGGAAAGAATCGCTGAGAGGATGAAAGCCTTACAGGAACTTGTTCCTAATGCTAACAAGACAGACAAGGCCTCCATGCTAGATGAGATCATCGATTATGTGAAGTTCCTCCAGGTCCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGCGGAGCAGGGGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGTTGTCAGTGACTGCGTCCAAGCCAACGGCAACCCCCGGAACTCTACCGGCAACCCAAAAACGGCGAACGAGAGCCTGACAATGACGGAGCAGCAGGTGGCTAAGCTGATGGAGGAAGACATGGGATCCGCTATGCAATACTTGCAAGGCAAAGGTCTTTGCCTCATGCCAATTTCCCTAGCTACAGCTATCTCCACTGCCACGTGTCACAACAGGAACCCCTTGATGATCAACGCCGCCAATAACGGTAACTCCAACCCTGTTATTGCATCCAACGGTGATGGGCCTTCTTCTCCCGCAATGTCCGTAAACAGCATCGTCAAAGATGCCGCGTCCGCTTCTAAGTCGTAG 1203 0.4988 MHPCSREMQSLNSLLNSPPSQIPIPLQNHSQIQINHDTFHQSHNSHDDFLKQILSTLPSSSSWNNLDPTNSNPKPLWDSNSDETPLSDNVHFPNYDEHTNLASKFRNHQINDKAAALMLLRGADSGLLQMPLNPADFDSSQNDVVDASSVQALYNGFSGSLHGIAQNNTNHHFQGQGFGGSVSATNQAPASGTPGQPRQKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAGAVAPLVADMSSEVVSDCVQANGNPRNSTGNPKTANESLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHNRNPLMINAANNGNSNPVIASNGDGPSSPAMSVNSIVKDAASASKS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00159 400 MobiDBLite consensus disorder prediction 1 25 - -
Car07g00159 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Car07g00159 400 SMART finulus 213 262 IPR011598 GO:0046983
Car07g00159 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 362 - -
Car07g00159 400 MobiDBLite consensus disorder prediction 167 211 - -
Car07g00159 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 266 IPR036638 GO:0046983
Car07g00159 400 MobiDBLite consensus disorder prediction 60 84 - -
Car07g00159 400 MobiDBLite consensus disorder prediction 167 194 - -
Car07g00159 400 PANTHER TRANSCRIPTION FACTOR BHLH69 38 362 - -
Car07g00159 400 Pfam Helix-loop-helix DNA-binding domain 212 257 IPR011598 GO:0046983
Car07g00159 400 Gene3D - 202 264 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00159 Car-Chr7 1376341 1379979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00159 179 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.278 3.09e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car07g00159 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00159 - - gmx:100807286 394.43