Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00143 ATGGACACTCGCGCTCTCTCACTCTCACCACTTATTCTTCATTCATTTGAAAACCCAACTTGTATCCCTCGTTCACATAACAACCACCATTTTGTGAGACTATTCTCTTCCATTCACATCAACCGTGTCTCCAAAACTCCACTAGCCATTCAGAATCCTTCTCCCACCATTCCTACACCGGATAATGGTAAACTCACAACTCCCACTCTCAAACAATTATGTCAAACTCATGTACCCGACCAAATACTGCTAAGGATGGAAGAGGTTGGATATGTCATGCCTACAGAGGTCCAGAGGCAAGCATTGCCTCGTCTTTTTACCGGCCGTGActgcattcttcatgctcagACAGGTTCTGGGAAGACACTTACGTACTTGCTTTTGATCTATTCCATCATCAACACTAGAAAATCTGCTGTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTACTAAGGTTGCTAGGATACTGGCAGCAAAGCCAACTGGAGTTGAAGGGGAGCAGAAGTCATGTACCATCATGGCTTTGTTAGATGGAGGAACATTGAGAAGGCAGAAAACCTGGTTTAAGGCAGAGCCTCCAGCAGTAGTAGTTGCAACAGTTGGGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTTCACTTGGAACCTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCCTTTTCAATTCTTCAAAGCAAGCTAGTTCTCTTCGGAAGATTTTGACCACATATTCATCTTGTAACAATCGTCAGACAGTTTTTGCCAGTGCATCTATACCACATCACAATCGATTTCTTCATGATGCTGTGCAGCAGAAATGGACCAAGAGGGATGTGATCCATATTCATGTTAGTCCGGTGGAGCCCATGCCATCTCGCCTATATCATAGATTCATAGTATGTGATACGAAAAGAAAACTACAAACCTTGTTATCCTTGATTCAATCTGATGCTCCTGAGTCTGGCATTATATTCGTTGGTGAGCAGTCCGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTGATTGACTTTCTAAAGGCATCATATCATGGATCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAAGTTAGAAAAGGTGGTGGCTATCTTCTAGTGGCAACAGATGTAGCTGCTAGAGGAGTTGATTTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAAATGCCATAGATTATCTTCATCGAGCAGGGAGGACATGTAGAAAACCCTTTTCGGACATTAATTGTAATGTCACCAGCATTATAGTCCCTGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGTCTGTGAAGAGCTTATTCCATAG 1413 0.4232 MDTRALSLSPLILHSFENPTCIPRSHNNHHFVRLFSSIHINRVSKTPLAIQNPSPTIPTPDNGKLTTPTLKQLCQTHVPDQILLRMEEVGYVMPTEVQRQALPRLFTGRDCILHAQTGSGKTLTYLLLIYSIINTRKSAVQALVLVPTRELGMQVTKVARILAAKPTGVEGEQKSCTIMALLDGGTLRRQKTWFKAEPPAVVVATVGSLCQMLERQLFSLGTLRVLVVDEVDFLFNSSKQASSLRKILTTYSSCNNRQTVFASASIPHHNRFLHDAVQQKWTKRDVIHIHVSPVEPMPSRLYHRFIVCDTKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLLIDFLKASYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDFPEMTHIYNFDLPKNAIDYLHRAGRTCRKPFSDINCNVTSIIVPEERFVLQRYENELMFVCEELIP 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00143 470 SMART ultradead3 90 305 IPR014001 -
Car07g00143 470 Pfam DEAD/DEAH box helicase 95 267 IPR011545 GO:0003676|GO:0005524
Car07g00143 470 Gene3D - 298 467 IPR027417 -
Car07g00143 470 Gene3D - 45 282 IPR027417 -
Car07g00143 470 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 51 469 - -
Car07g00143 470 Pfam Helicase conserved C-terminal domain 313 432 IPR001650 -
Car07g00143 470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 470 IPR001650 -
Car07g00143 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 436 IPR027417 -
Car07g00143 470 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 469 - -
Car07g00143 470 CDD SF2_C_DEAD 303 432 - -
Car07g00143 470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 102 284 IPR014001 -
Car07g00143 470 SMART helicmild6 350 434 IPR001650 -
Car07g00143 470 CDD DEADc 82 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00143 Car-Chr7 1275941 1281977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00143 90 468 Eukaryotic Initiation Factors Gene Family AT1G72730 26.823 3.06e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00143 - - mtr:MTR_4g131750 744.962