Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car07g00133 | ATGATGCAACCAGGACCCGGTATTCCTCCACCCACCATGCCCCAACAATACCAACAACAACCCTACATGATGATGCCTCCTCAGCCACAACCTCACACACAACCGCCTCAGATGTGGGCCCCATCCGCACAACCCCCTCCTCAATCTCTCCCTCAACAACAACAGGCACAACCTACTAGCGCCGATGAGGTCCGTACTCTCTGGATCGGAGATTTGCAATACTGGATGGACGAGAACTATCTCTACACCTGTTTCTCTCACACCGGCGAGGTTGGATCTATCAAAGTTATTCGTAATAAGCAGACTAATCAATCTGAAGGTTATGGCTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAAAGAGTGCTTCAAACATTTAATGGCACTATTATGCCAAATGGTGGGCAGAACTTCAGATTGAACTGGGCAACATTTAGTTCTGGTGAGAGGCGTCATGATGATTCTCCGGATTACACAATATTTGTTGGAGACCTGGCTACTGATGTTACAGATTATCATCTGACAGAAGTATTTAGAACTCGGTATAGTTCAGTTAAGGGGGCCAAAGTTGTGATTGATAGGCTCACTGGTAGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGGGTGAACAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTAACACACAGTCATCCAAAGCATCCTATCagaatcctcaagggggggcacagaacgagaatgatccaaataatacaacaatttttgttggcaatttggatcctaatgtcacagatgatcatttgagacaagtttttgggcagtacggtgagctagttcatgttaagattccagcaggcaagagatgcggatttgtccaatttgctgacagGAGCTGTGCAGAGGAGGCACTGCGCGTGTTAAATGGTACACTTCTTGGGGGACAAAATGTTCGCCTTTCATGGGGCAAAAGTCCAAACAAACAGGCCCAACAGGATCCAAACCAGTGGAGTGGATACACCCAGGGTTATGGATACACCCAAGGTTATGAAAATTACGGTTATGCTCCTGCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCGGGATATGCAAACTACCAACCACCTCAGCAGCAACAGCAAATAGGATATAGTAGTTAA | 1203 | 0.394 | MMQPGPGIPPPTMPQQYQQQPYMMMPPQPQPHTQPPQMWAPSAQPPPQSLPQQQQAQPTSADEVRTLWIGDLQYWMDENYLYTCFSHTGEVGSIKVIRNKQTNQSEGYGFIEFTSRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGERRHDDSPDYTIFVGDLATDVTDYHLTEVFRTRYSSVKGAKVVIDRLTGRTKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPASNKNLNTQSSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGKSPNKQAQQDPNQWSGYTQGYGYTQGYENYGYAPAAGQDPNMYGSYPGYANYQPPQQQQQIGYSS | 400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car07g00133 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 237 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Car07g00133 | 400 | CDD | RRM3_NGR1_NAM8_like | 264 | 335 | - | - | |
| Car07g00133 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 65 | 145 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP45B | 14 | 396 | - | - | |
| Car07g00133 | 400 | MobiDBLite | consensus disorder prediction | 24 | 52 | - | - | |
| Car07g00133 | 400 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Car07g00133 | 400 | CDD | RRM1_SECp43_like | 66 | 146 | - | - | |
| Car07g00133 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 223 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 267 | 330 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 67 | 132 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 153 | 254 | IPR035979 | GO:0003676 | |
| Car07g00133 | 400 | SMART | rrm1_1 | 66 | 141 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | SMART | rrm1_1 | 159 | 233 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | SMART | rrm1_1 | 266 | 333 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | Gene3D | - | 157 | 233 | IPR012677 | - | |
| Car07g00133 | 400 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 14 | 396 | - | - | |
| Car07g00133 | 400 | Gene3D | - | 237 | 368 | IPR012677 | - | |
| Car07g00133 | 400 | CDD | RRM2_SECp43_like | 157 | 236 | - | - | |
| Car07g00133 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 252 | 361 | IPR035979 | GO:0003676 | |
| Car07g00133 | 400 | MobiDBLite | consensus disorder prediction | 378 | 400 | - | - | |
| Car07g00133 | 400 | MobiDBLite | consensus disorder prediction | 385 | 400 | - | - | |
| Car07g00133 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 265 | 337 | IPR000504 | GO:0003723 | |
| Car07g00133 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 146 | IPR035979 | GO:0003676 | |
| Car07g00133 | 400 | Gene3D | - | 11 | 153 | IPR012677 | - | |
| Car07g00133 | 400 | MobiDBLite | consensus disorder prediction | 232 | 265 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car07g00133 | Car-Chr7 | 1192455 | 1196801 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car07g00133 | 264 | 334 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.364 | 3.81e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car07g00133 | - | - | gmx:100796848 | 590.882 |