Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00098 ATGAGTCAACTCGGTCTCATATTGCAAGAATCTCAAAGAGAAGCAAGAACCATTCTCGGTTTATTAACTCAACAAATGGACGCCGTTGACACACGCACAAGAAGGAGACGGACTCTCAAAGAACGCTTCAGATTCACCGGAATCGGATGCTGTGGAGCCACCTGGGTTTTCCGTCCCGTTCTCCGTCACGAACATCAACAACAAGAGGAAGCTACGGAGGAGCAACAACTACCGGTTCAAGATCCGGACCCGGTCGAACCAGAATGCGTAGGACCAGGTCCGTCTGGTTCCGGCATGAATCTTGCGGCGGCGTTGGCGGCGGAGCGTCAGATGAGAGGGCCGGAGGAGGGAGAGACGCCGTGGAGGGTTTCATTAATGAGACTGTTAGAGGAAACGGAAGTGGAAACGGCGGTTGAAGAGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTCTGTAGAGTTTGTTCGAGGGAAATGTGGCTGAATCGAGGGAGTTGTCCCCTTTGTAATCGCTCCGTTCTCGAGATTCTCGATATTTTCTGA 585 0.5214 MSQLGLILQESQREARTILGLLTQQMDAVDTRTRRRRTLKERFRFTGIGCCGATWVFRPVLRHEHQQQEEATEEQQLPVQDPDPVEPECVGPGPSGSGMNLAAALAAERQMRGPEEGETPWRVSLMRLLEETEVETAVEEGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSVLEILDIF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00098 194 CDD RING-HC 146 183 - -
Car07g00098 194 SMART ring_2 146 183 IPR001841 -
Car07g00098 194 SUPERFAMILY RING/U-box 139 191 - -
Car07g00098 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 193 IPR013083 -
Car07g00098 194 MobiDBLite consensus disorder prediction 66 93 - -
Car07g00098 194 PANTHER OS01G0917900 PROTEIN 14 194 - -
Car07g00098 194 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 194 - -
Car07g00098 194 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Car07g00098 194 Pfam Zinc finger, C3HC4 type (RING finger) 143 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00098 Car-Chr7 895876 896929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00098 18 194 C3H Transcription Factor Family AT4G22250 55.838 2.00e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00098 - - gmx:100792613 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00098 07 895876 896929 Car01g00700 01 5848518 5849657 PCT