Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00079 ATGACTGTAATCGAAACCCCTTTCCTTCATCATCAACAACAAAATCGTCATTCGTCGAAACGGAAATTTGACGATGACGACGAAAACAACAACAACAACGTTTCAGATGACTTAGTGTCTGTGAGAATGAGGAAAGACGAGACGAAAACAGTTAATTCGTGGAGCggcggcggcggcggtggtggtggtgacggtggtggtTTGTTGAAACGAAGTCCTATTCAGTTTTTCATTCGTATGATGTCAGAAGGTAATAATATTGTGATGCATGCTTATCCAGAAGAAAACGTGAAATCAATTCATGAACGAATTCAATACATGAAAGGAATTCCTCTTTTCGAACAAAGGTTAATTTACCGCGGTAAACAGCTTCAGTGGGAACAAACTCTCGCTGAGTGTTGTTTACAGAACGACGCGATTCTTGAACTTGTTGGTCGTATGCGTAGCACTGAACATCCTCAAGCTTGGCAAGTTGTAAATGATATGGTTTCTTTAGTTTACCGTCTTTGTTGTGGTGAAAATGTTCATGTTCCTGATAAAATTGTCAAGGGTCTTATTACTACTTACATTAATCTTGCTTTGACACCTAAACCTAAACTTGATGCTGATTCTGCCAATGGTTATTTTGAGATTTTCACTTCTTCATCAGCTCCTTCTGTTCTTGTTACTCTTTATGTTTCACCTTACCCGGGTAATAAGTTGTGTGCTGATTCTTGTATTAGGCATTTTTTGAATTTATGTCGCAGTACTTTGTCTAAGACTTTTCATACACAAGCTGCGCGTGTTGCTTTGGAGATTTGTAAATTGCTTAGGAGAGTTGGGTCTCATGATCCTTTATATCTCTATTGTCGTAGTAGCTTAGGGGTATTGTTGGAAGCTGCTGAAATTTCTTGTGCTTCTTCTGAGGCTGAGAATGTTAGAGGATTGATATTAGTTCAAGATATTTTCCCCTTTGTTCGCGAGCTTGCGGATACATTGTTGATGAATTTGGATTTGAGTATTGATTCACCTTCACTTGCTTGTCCTTTGTTGAGCAATGTTGGGGATTTTACTTCGTTTTTAATACCTTTGAGGACTGGAATCAAGGAGCAGCGTAGGCTTCGCAATGGTTCTGTACCTTACCACCTGCACTACAGGAACAGTTTGCTCATTGAAGAGATTGAGTACCTTCATCTTTTGTACAATCAGATGTTGTGCAAAGTTGATACGTGCCTTCAGAAAATGGAGCAGAGATTCATTAGAAAGGAAATGGTGCAGGAGGAGAATTATTTTTACCCTGCTTGCTCTCTTTATCTTTCCATTTTGAAGGAGTTGAATCAAATTGCTAAGCTTTATGATGGTGCTCAAGAAAAACTCAGGAGTGTTTTGGTCAGGCAAAAGAATGTGCTGCGTATGCTGCTTGTTAAGTATGCAAAGAGGACCGACGAGCATCAGTGGATTCTCGAGCACAAGAATGTCACTGATTTTGAGACTAGGAGGCATTTGGCCATGATGATGTTCCCGGAGGTAAAAGAAGATTATGAGGAGCTGCATGAGATGCTCATTGACAGGTCTCACTTATTAACTGAATCTTTTGAATATATTGCACGTGCTGAGGCCGAATCACTGCAGTCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCCGGTGTGCTGAGGGAGTGGTTCCTCTTGGTTTGTCAAGCAATATTCAATCAGGAAAATGCTCTTTTTGTTGCTTGCCCAAATGATCGAACGAGGTTTCTCCCCAATTCTGCTTCCAAGGTCCATCCTCTGCATCTTGAGTACTTCAGCTTCTGTGGCCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTAGGGATTGTTTTTGATCGCGTGTTTTTCTTGCAATTGGCTGGAAAGTCTGTTACTTTAGAAGATATAAAGGATGCAGATCCTGACCTATATAAAAGCTGCAAGCAAATACTGGACATGGATTCTGATTTCATTGATTCGGATGCATTAGGACTGACATTTGTTAGAGAAGTGGAGGAATTAGGACACAGGAAAGCGGTTGAGCTCTGCCCTGGTGGAAAAAACATTGCAGTTAATAGTAAGAACAGGGTGAAGTATGTTTATCTTCTTATACAGGACCGTTTTGTAAACTCAGTATCCGAGCAGGTCTCTCACTTTGCCAAAGGTTTTGCTGATATTCTATCAAATTCAAAGCTCCAGCAGTTCTTTTTTAAAGGTTTAGAGCCTGAAGATCTTGATCGGATGCTGCGTGGGAGCGAATATGCCATTTCTGTCGAAGATTGGAAAGCACACACCGAATATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATAGTGGGGAGGATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAGTATTTACCAGTTGAAGGCTTCCGTGGTTTGGCTTCTCGTCTCTACATTTGCAAGTCTCATGAACCTGGTGATCTCCTTCCTTCATCTCATACATGCTTTTACCGACTGTGTTTCCCGGCTTATTCATCTATGCCTGTCATGCAAGCCCGCCTTAAAGTCATTACTCAAGAACATATTTGCTGTAGTTTCGGTACTTGGTGA 2619 0.4005 MTVIETPFLHHQQQNRHSSKRKFDDDDENNNNNVSDDLVSVRMRKDETKTVNSWSGGGGGGGGDGGGLLKRSPIQFFIRMMSEGNNIVMHAYPEENVKSIHERIQYMKGIPLFEQRLIYRGKQLQWEQTLAECCLQNDAILELVGRMRSTEHPQAWQVVNDMVSLVYRLCCGENVHVPDKIVKGLITTYINLALTPKPKLDADSANGYFEIFTSSSAPSVLVTLYVSPYPGNKLCADSCIRHFLNLCRSTLSKTFHTQAARVALEICKLLRRVGSHDPLYLYCRSSLGVLLEAAEISCASSEAENVRGLILVQDIFPFVRELADTLLMNLDLSIDSPSLACPLLSNVGDFTSFLIPLRTGIKEQRRLRNGSVPYHLHYRNSLLIEEIEYLHLLYNQMLCKVDTCLQKMEQRFIRKEMVQEENYFYPACSLYLSILKELNQIAKLYDGAQEKLRSVLVRQKNVLRMLLVKYAKRTDEHQWILEHKNVTDFETRRHLAMMMFPEVKEDYEELHEMLIDRSHLLTESFEYIARAEAESLQSGLFMEFKNEEATGPGVLREWFLLVCQAIFNQENALFVACPNDRTRFLPNSASKVHPLHLEYFSFCGRVIALALMHRVQVGIVFDRVFFLQLAGKSVTLEDIKDADPDLYKSCKQILDMDSDFIDSDALGLTFVREVEELGHRKAVELCPGGKNIAVNSKNRVKYVYLLIQDRFVNSVSEQVSHFAKGFADILSNSKLQQFFFKGLEPEDLDRMLRGSEYAISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFRGLASRLYICKSHEPGDLLPSSHTCFYRLCFPAYSSMPVMQARLKVITQEHICCSFGTW 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00079 872 Gene3D Hect, E3 ligase catalytic domains 512 739 - -
Car07g00079 872 Gene3D Hect, E3 ligase catalytic domain 756 871 - -
Car07g00079 872 SMART hect_3 530 870 IPR000569 GO:0004842
Car07g00079 872 MobiDBLite consensus disorder prediction 1 38 - -
Car07g00079 872 CDD HECTc 511 870 IPR000569 GO:0004842
Car07g00079 872 ProSiteProfiles Ubiquitin domain profile. 74 150 IPR000626 GO:0005515
Car07g00079 872 Pfam Ubiquitin family 77 148 IPR000626 GO:0005515
Car07g00079 872 SUPERFAMILY Hect, E3 ligase catalytic domain 507 858 IPR035983 GO:0004842
Car07g00079 872 MobiDBLite consensus disorder prediction 48 67 - -
Car07g00079 872 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 71 870 - -
Car07g00079 872 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 71 870 - -
Car07g00079 872 SUPERFAMILY Ubiquitin-like 74 162 IPR029071 -
Car07g00079 872 Pfam HECT-domain (ubiquitin-transferase) 561 863 IPR000569 GO:0004842
Car07g00079 872 SMART ubq_7 74 146 IPR000626 GO:0005515
Car07g00079 872 Gene3D - 66 161 - -
Car07g00079 872 PRINTS Ubiquitin signature 85 105 IPR019956 -
Car07g00079 872 PRINTS Ubiquitin signature 106 126 IPR019956 -
Car07g00079 872 PRINTS Ubiquitin signature 127 148 IPR019956 -
Car07g00079 872 Gene3D Hect, E3 ligase catalytic domain 632 714 - -
Car07g00079 872 ProSiteProfiles HECT domain profile. 532 872 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00079 Car-Chr7 775146 781770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00079 74 149 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 34.211 1.45e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00079 - - gmx:100789233 1262.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00079 07 775146 781770 Car01g00721 01 6099516 6104612 PCT