Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00052 ATGGAAAGTAGTGGAGGTTTTCATGGCTACCGCAAGCTCCCCAACACTACTACCTCTGGAGGAACATTGAAGCTATCAATGTCTGAGATGAACACAAGGCAACAAGTAGGAGAACAGAACAACCACACAACAACAGAACAAGACAACGAATGCACTGTAAGGGAACAAGACCGTTTCATGCCAATTGCAAACGTGATTCGCATAATGCGCAAGATTCTTCCACCACACGCAAAGATCTCAGACGATGCAAAAGAAACAATTCAAGAATGTGTATCCGAATACATCAGCTTCATAACTGGTGAAGCCAATGAACGTTGTCAGAGAGAGCAACGTAAGACAATAACTGCAGAGGATGTGCTTTGGGCTATGAGTAAACTTGGTTTTGATGATTACATTGAACCTCTTACAATGTACCTTCATCGCTATCGTGAGCTGGAAGGTGATCGAACCACTATGAGAGTTGAAACTTTGGGAAAAAGGACTAGTGCTATGGAATATGGAAGTTTAGGGGGTTTTGTTCCACAATTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATCCTGCACCAACTATGGGGaattataatcatcatcatactcatactaataataataataataacaatGCAACAAATGCTGCAGGTTCATCTCATTCTTCTCATGGTGGTGGGATTGGAAATGCTGAAGCcaatggtcatcatcaccatcatcaatataaatga 726 0.3815 MESSGGFHGYRKLPNTTTSGGTLKLSMSEMNTRQQVGEQNNHTTTEQDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTTMRVETLGKRTSAMEYGSLGGFVPQFHIGHPNGGYYGNPAPTMGNYNHHHTHTNNNNNNNATNAAGSSHSSHGGGIGNAEANGHHHHHQYK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00052 241 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car07g00052 241 MobiDBLite consensus disorder prediction 1 51 - -
Car07g00052 241 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 159 - -
Car07g00052 241 MobiDBLite consensus disorder prediction 10 47 - -
Car07g00052 241 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Car07g00052 241 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Car07g00052 241 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Car07g00052 241 MobiDBLite consensus disorder prediction 197 241 - -
Car07g00052 241 MobiDBLite consensus disorder prediction 197 225 - -
Car07g00052 241 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 123 IPR003958 -
Car07g00052 241 Gene3D Histone, subunit A 46 165 IPR009072 GO:0046982
Car07g00052 241 ProSitePatterns NF-YB/HAP3 subunit signature. 90 106 IPR003956 GO:0005634|GO:0006355|GO:0043565
Car07g00052 241 SUPERFAMILY Histone-fold 56 152 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00052 Car-Chr7 559986 562959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00052 5 204 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.679 3.53e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car07g00052 CBFD_NFYB_HMF 7.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00052 K08065 - gmx:100800011 288.5