Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00045 ATGAAACGACCTACCGATGAATTGGCCGCCACTATAACCAAACCAGTCTTCCTCACCAAAGCCCAGCGCGAACACTTAGCTCTTCAACGCCGCCAAGATCAAAGGGAACGACGAAACCGTGATAGGGAGCGAGAAGAAGAGAGTAAGGCTCGCGATCGTGCTCGATTGGAGAAACTTGCGGAGCGAGAGCGCGAGAAAGAGCTTGAATTGATCAAGGATCAATACCTAGGGTCAAAAAAACCTAAAAAGAGAGTCATTAAACCTAGCGAGAAATTTCGATTCTCATTCGATTGGGAAAACACTGAAGACACTTCTCGTGACATGAACTCTCTTTACCAAAACCCTCACGAGGCTCAGCTTCTATTTGGTCGAGGGTTTCGTGCTGGAATGGATCGCCGCGAGCAGAAGAAATTGGCTGCCAAGAACGAGAAAGATATGCGCGATCAAATCAGGAAGAAGGATGGAATCGAGGAGAAGCCTGAGGAGGCCGATGCTCAGCGGCGTAAGGAGGCTGCTGCTGATGTGTACGATACTTTTGACATGAGGGTTGACCGCCATTGGAGCGAGAAGAAGCTTGAAGAGATGACAGAGAGGGATTGGCGTATTTTCAGAGAGGATTACAATATTTCCTACAAAGGTTCCAAGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGCAAGTTGAGTCAAGAGCTTTTGAAAGCTGTTGAGAAGGCTGGTTACAAAACCCCTTCTCCTATTCAAATGGCTGCTATTCCACTTGGTCTCCAACAGCGCGATGTTATCGGAGTTGCCGAGACAGGTTCAGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTACATTACTAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCTGAGGGTCCTTATGCCGTTGTTATGGCGCCCACTCGTGAGCTTGCTCAACAGATTGAGGATGAAACTGTTAAATTTGCTCAGTATATGGGTATTAAAGTTGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCTACTCCTGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCGGTTCTTAACCAGTGTAATTATGTTGTTCTCGATGAGGCCGATCGAATGATTGATATGGGGTTTGAACCACAGGTTATGGGTGTGCTTGATGCCATGCCTTCTAGCAATCTCAAACCCGAGAATGAAGATGAGGAGCTTGATGAGAAGAGGATTTATAGGACCACTTATATGTTCAGTGCCACCATGCCCCCTGCTGTGGAGAGGCTTGCTAGGAAGTATCTGAGGAACCCTGTTGTTGTGACTATAGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATTTTATAAGCTTCAGAGATTGTTGGATGAGCTCAATGATAAGACAGCAATTGTGTTTGTCAACACCAAGAAGAATGCCGATTATGTTGCCAAGAATTTGGATAAGGAAGGCTATCGCGTGACCACTTTGCATGGAGGGAAATCTCAGGAACAGAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACCGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCACGTTATCAACTTTGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGAACTGGCCGTGCAGGAAAGACAGGTGTAGCTACCACATTCCTAACTCTTCAGGATACTGATGTCTTTTATGACCTCAAACAGATGCTGGTTCAGAGTAATAGTCCTGTACCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCAATTCCCGACAGGCCACCTAGGCGAAACGACACTGTTTTTGCCCACTAG 1926 0.4616 MKRPTDELAATITKPVFLTKAQREHLALQRRQDQRERRNRDREREEESKARDRARLEKLAEREREKELELIKDQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGIEEKPEEADAQRRKEAAADVYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADYVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINFDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLVQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00045 641 MobiDBLite consensus disorder prediction 132 170 - -
Car07g00045 641 CDD SF2_C_DEAD 459 588 - -
Car07g00045 641 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Car07g00045 641 Pfam DEAD/DEAH box helicase 246 436 IPR011545 GO:0003676|GO:0005524
Car07g00045 641 PANTHER - 29 634 - -
Car07g00045 641 MobiDBLite consensus disorder prediction 608 641 - -
Car07g00045 641 SMART helicmild6 498 579 IPR001650 -
Car07g00045 641 Pfam Helicase conserved C-terminal domain 473 579 IPR001650 -
Car07g00045 641 SMART ultradead3 240 462 IPR014001 -
Car07g00045 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 600 IPR027417 -
Car07g00045 641 Gene3D - 182 451 IPR027417 -
Car07g00045 641 MobiDBLite consensus disorder prediction 616 641 - -
Car07g00045 641 Gene3D - 452 639 IPR027417 -
Car07g00045 641 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 29 634 - -
Car07g00045 641 CDD DEADc_DDX23 232 448 - -
Car07g00045 641 Coils Coil 42 62 - -
Car07g00045 641 MobiDBLite consensus disorder prediction 21 59 - -
Car07g00045 641 MobiDBLite consensus disorder prediction 24 59 - -
Car07g00045 641 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 376 384 IPR000629 -
Car07g00045 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 447 IPR014001 -
Car07g00045 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 618 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00045 Car-Chr7 508382 514051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00045 219 615 Eukaryotic Initiation Factors Gene Family AT3G19760 30.905 2.82e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00045 K12858 - gmx:100799264 1142.1