Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00028 ATGATCAGAACTGAAAATTTTCGTTCAATTGGACTTAAGAAAACCCTAGTTTTCTATTCTGGTAAGGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAACGAGTATCGTTTGCCTCAACATGAAACCGAACGTTATCAAAAGGGTGAGATATCGCTATGCCGAGTATACAAGAGAGCAGGAGTAGAAGATCATCCCTCCCTCCCTCGTTGCCTACCTATTACAAGAGGTAATCATTCAGATCATAAGAATAAACAGAATGAAATATTGGGAATGGGATTTGTTGGTGGACAGTCTAATAAGgcagctgcaacgccaacgccaactgcaactgcaTCAATTAACAACAAAATGCATGAAGGAAGCTGCAGTGTTGGCAATTCCAATTCGGATCATGTGACAACAGTTCTTGGTCTTTCCAAATACAGTACTGATCCTAATTACCGTGCAGCggaggaggaggaggaggaAAGGTTAATGATGATGCAGCAACAACAAGTACAATATTCTGCAGGAGGCAACAGTACTTTGTTACTCCCTCTCCCTGCAGCTTGTTTCCCTCTCCAAAATTCAGCAGTTAGTTCCAACAGTAGTATGATGGATGATCTCAATAGGCTTGTGAGTTTTAATAATAATAATCAACATCACTACTGCTACaatccaaatccaaatccaaatccaaatcATTTGTCTACTTTGCTGATGCAACCAGCTACTCTCAACTCTTCAGTACTACCAATTACTCCAATTCCAACCAACTTCTCTGACCGGCTATGGGACTGGAATCCAATCCCTGAGGATCACCCAAACCCCTCCTTCAAGTAA 825 0.3697 MIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRGNHSDHKNKQNEILGMGFVGGQSNKAAATPTPTATASINNKMHEGSCSVGNSNSDHVTTVLGLSKYSTDPNYRAAEEEEEERLMMMQQQQVQYSAGGNSTLLLPLPAACFPLQNSAVSSNSSMMDDLNRLVSFNNNNQHHYCYNPNPNPNPNHLSTLLMQPATLNSSVLPITPIPTNFSDRLWDWNPIPEDHPNPSFK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00028 274 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 1 267 - -
Car07g00028 274 SUPERFAMILY NAC domain 8 58 IPR036093 GO:0003677|GO:0006355
Car07g00028 274 ProSiteProfiles NAC domain profile. 1 59 IPR003441 GO:0003677|GO:0006355
Car07g00028 274 Gene3D NAC domain 1 62 IPR036093 GO:0003677|GO:0006355
Car07g00028 274 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 267 - -
Car07g00028 274 Pfam No apical meristem (NAM) protein 9 38 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00028 Car-Chr7 330044 331879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00028 1 79 NAC Transcription Factor Family AT2G02450 79.747 3.58e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car07g00028 NAM 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00028 - - mtr:MTR_4g134460 299.286