Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00026 ATGGAAGGAATACCGCACCCAATACCTCGAACAGTTGAGGAGGTTTTCAGCGACTTTAAGGGCAGACGCGCTGGATTGATCAAAGCCCTCACTATAGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGACAAGGAGAATTTATGCCTTTATGGATATCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCGGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGCATGCAGGAGAAGGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGCTGCTAGCTGTTGCTTTCTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGACTTTTTCAGATGATAAATGATCTGCCGACTATCTTTGAGCTTGCGACAGGAACTGCTAAGCAATCAAAGGACCAACCAACTGCTCACAACAATGGTAGCAATAGTAAATACAAATCAAGCGGAAAGTCCCGCCAATCTGAGTCCCAGGCCAAGAGTGTGAAGATGTCTGCACCACCCAaagaagaggatgacagtggagaggaggaagaagaagatgatgaaCAGGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGCGAGAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCCGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCCAGCTGCAGTAACAAGAGGCCAAGAGTTTGA 765 0.434 MEGIPHPIPRTVEEVFSDFKGRRAGLIKALTIDVEKFYQLCDPDKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELATGTAKQSKDQPTAHNNGSNSKYKSSGKSRQSESQAKSVKMSAPPKEEDDSGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRPRV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00026 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Car07g00026 254 SUPERFAMILY FYVE/PHD zinc finger 189 252 IPR011011 -
Car07g00026 254 MobiDBLite consensus disorder prediction 184 199 - -
Car07g00026 254 MobiDBLite consensus disorder prediction 140 201 - -
Car07g00026 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Car07g00026 254 SMART PHD_3 200 248 IPR001965 -
Car07g00026 254 CDD PHD_AL_plant 201 250 IPR044104 -
Car07g00026 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Car07g00026 254 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Car07g00026 254 Pfam Alfin 11 137 IPR021998 GO:0006355|GO:0042393
Car07g00026 254 Pfam PHD-finger 201 250 IPR019787 -
Car07g00026 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 250 - -
Car07g00026 254 MobiDBLite consensus disorder prediction 140 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00026 Car-Chr7 309290 314541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00026 1 251 Alfin-like Transcription Factor Family AT1G14510 80.478 6.46e-131 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Car07g00026 Alfin 7.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00026 - - gmx:100807826 460.685