Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00025 ATGAGTGATCCAAGAAGGCTCCACTTGAAGAAGGAACTCACTCAAATTCGTAAGGCTTCTCGTGTCTTAAGGGATCCCGGCACAACTTCTTCATGGAAATCCTCAAGATCTACTACTCTCTTCAGGGATCCCAACAACAACTCTTTCTCTGCtaataataataataataataataataTTAACAATGAAAACAACAACAAGGTCTTCTTATACAACTGGAAGAACAACTACAATTCCTTCAACCaagaagaagaagaagaagaagaagaagaagaagaTTCTTCTTCTTACTCCCTTCTTGCAAGTTTAGAAGACAACGGTTTCGATTCCAAGAGTGACGCTGGGACCCGCCCTTCCTTTTTCCTTAATCATAATAACAAGAAGAAGAAAAAGTGTAACAAAAACACAAACCCTCATTTTGATTTCTTAACAAACCACACTAAACTCTTAACCCCTAATTCCAACAAATTACTACACCGCCATTCTCCGTTTACCAAGGATGATTCCGACTGTTATTCTAACTCCGTTTCTGGCGCTTCTCCCATTCTTCTTCGCAAACTCAAACATACCAATCAATCTCGTTCTTCCTCCAACTTCATTAGAACAAGCCCTAAAGATGACTCTTCTTATTCCTATAGTACCCCTGCATTGTCAACTAGTTCTTACAACAGAACTTACGCTCGTCGCCGCCGTCACTATCCCAGCACAGTTGGATCCTATGACGGTACAACCACTTCCGTCAATGACGGTGATGACGAGATTGATGACCGTTTGGATCTGCCTGGTCGTCAAGGATGTGGAATTCCTTGCTATTGGTCTAAGAGGAGTTGTTGTTCTCCTTCTCTTTCTGATACTTTAAGGAGGAAAGGTAGCAGCATTCTCTGTGGAACTCAATCTATGTATTCAAGACACAGGAGATCTTGTTCAGCTTCACACAAGAGGAGAATGCCTTTGAGGAGTGCTCGTGGAGGTGGAGGTGGAGGTGTTGTTCCTTTGCTCACTAGTACTAGTAGTGGTGATGTTAGACAAGGTTCATCTATTGGAATTGGTAGGAGTGATTATGAGGATGATGATGTTTCTACTAACTTTGGAGAGCTTGATCTTGAGGGATTAAGTAAGTTGGATGGAAGAAGGTGGTCATCCAGTTGTAGGAGTCAAGAGGGAATGGAGATTGTGCTTATCAATGCGGAAGGGGAGGAGGATGAAGAAGGATCCTCCGAAAACGGTAGGAGTTTCATTCACAAGTATAAGCCTTTGTTCTTTGGTGAACTCATTGGTCAGAATATTGTGGTTCACTCACTCATCAATGCTGTTTCCAGGGGCCGAATCGCTCCTGTTTATCTTTTTCAAGGACCGCGTGGGACTGGTAAAACATCAACTGCCAGGATATTCGCTGCTGCCTTGAATTGTGTGACTTCTGATGAAAGTAAGCCTTGTGGATACTGCAGGGAATGTGCTGATTTCGTTTCTGGTAAGAGCAGTGATATGATGGAAGTTGATGGAACTAATAAGAAAGGAATTGATAAAGCTAGGTATCTGCTGAAAAGATTGTCAGTTGGGTCTTCTTCGGCAGCCTCTTCGCGATATACAGTTTTTGTTATCGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAGGAACCACCTCAGCGAGTTGTATTCATATTTATAACATCCGATGTTGACAATGTGCCACGAACAATACAGTCTCGATGCCAGAAGTACGTTTTCAATAAAATTAAAGATGGGGACATTGTGACCAGGTTAAGGAAAATATCTACTCAGGAGAACCTGGACGTGGAAACAGATGCACTGGACCTTATTGCCATGAATGCAGATGGTTCACTTCGAGATGCAGAGACAATGTTAGAACAGCTAAGTTTGTTGGGGAAAAGAATCACTAGTTCTCTTGTTAATGAACTTGTGGGAGTTGTTTCGGATGAAAAATTGTTGGAACTTTTGGAATTAGCAATGTCTGCAGACACTGCAGAGACGGTGAAAAGATCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGTCTTATTATGGACATCATTGCCGGATCGTATACGGTCGTTGATACCAAACCTGACGGTTCATCCTTTGGAGGTCGAAATTTGAATGAAACAGAGTTGGAGAGATTAAAGAATGCTTTGAGGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTGTTACAGCTTGGTTCCGTACCTTCTTCAGATCTTACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTGCAAAACAACCGAAGATGATCCATCAAGTACTTCAAGAGACATTACTTCTTTCAAGCACAAGTCAGACCTCCAATATACGCCTCACAACTCAACATCCCCTGCTTCCCACCAAAAAGCAGTAAACGGCATTTCCGGCCTTCAAATGGATACGTCCAGCTTGAAATCAAAGCCGTCAAATAGCCCGGTTATAAATGATGGCTCTACAGTGGTCTCATCTGATGATCTTATAGTTGGGAATGCAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGCATGTTGTATTGAGAAATGCCACTCTAAGACATTAAGACAGCTGCTACACAATCACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTACTTGTAGCATATGTTGCGTTTGGGGATGGAGATATTAAACTTAGGGTTGAAAGGTTTTTAAGAAGTATTACAAACTCATTGGAAATTGTTCTTAGACGCAATGTGGAGGTCAGAATTATCCTCTTGCCAGAGGATGAAGGTGAAAATCAGGTTAATCTGCCGGGTTTAAAGCAAGCTGCATCAACAGGGGCAAGTGAGGAGGAACATAGGCTAGGTCATGTGAATGGAACCGAGTCTTTTTCAAGTTTACCTGTTTTAATGAATGGAGGTTCATTAGATATTGTGGCGGAAGGAAATGGCGTGAGGGAAAGGAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAAAGATTGGAAACCGCCTGGTTACAGGCTGTAGAAAAAGGTTCTCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAGGATGGTGCTTATTGTGTAAACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCATCAGCATAGGGATGATGACGCAAATAGTGATCTTAAAATTTTGGCCCTTAAAAATGGAAGGGACCCACTGAAGGATCAGGTTGGTAAAAGGGCGGAGTGCTATCCCATGCCCCCGAGTTTATTGCATGACAGCAGTTTAGCAATAATAGCTGGAAAAGATAACATGGGTTATGAATCGGGTTCAGGAGCTAGAGGTTGTGGATTTTTATGTTGGAATAATAACAACTCCAAGACCAGAAGGGCAGTGAAGGTAAAAGGCACACCAGTTGGAGCGCGTAAAGCTAGGCGTTTTACATTGTTTGGTGAGTGTGGTAAGAAGCCGAAGAAAAAGGAGTGTAAAAGATAA 3573 0.4212 MSDPRRLHLKKELTQIRKASRVLRDPGTTSSWKSSRSTTLFRDPNNNSFSANNNNNNNNINNENNNKVFLYNWKNNYNSFNQEEEEEEEEEEDSSSYSLLASLEDNGFDSKSDAGTRPSFFLNHNNKKKKKCNKNTNPHFDFLTNHTKLLTPNSNKLLHRHSPFTKDDSDCYSNSVSGASPILLRKLKHTNQSRSSSNFIRTSPKDDSSYSYSTPALSTSSYNRTYARRRRHYPSTVGSYDGTTTSVNDGDDEIDDRLDLPGRQGCGIPCYWSKRSCCSPSLSDTLRRKGSSILCGTQSMYSRHRRSCSASHKRRMPLRSARGGGGGGVVPLLTSTSSGDVRQGSSIGIGRSDYEDDDVSTNFGELDLEGLSKLDGRRWSSSCRSQEGMEIVLINAEGEEDEEGSSENGRSFIHKYKPLFFGELIGQNIVVHSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVTSDESKPCGYCRECADFVSGKSSDMMEVDGTNKKGIDKARYLLKRLSVGSSSAASSRYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDVDNVPRTIQSRCQKYVFNKIKDGDIVTRLRKISTQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITSSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDTKPDGSSFGGRNLNETELERLKNALRLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDLTQSSSSRRQSCKTTEDDPSSTSRDITSFKHKSDLQYTPHNSTSPASHQKAVNGISGLQMDTSSLKSKPSNSPVINDGSTVVSSDDLIVGNAMFRCIDSGKLCDIWACCIEKCHSKTLRQLLHNHGKLVSISEVQGVLVAYVAFGDGDIKLRVERFLRSITNSLEIVLRRNVEVRIILLPEDEGENQVNLPGLKQAASTGASEEEHRLGHVNGTESFSSLPVLMNGGSLDIVAEGNGVRERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGAYCVNPMESMDSTRFSSHQHRDDDANSDLKILALKNGRDPLKDQVGKRAECYPMPPSLLHDSSLAIIAGKDNMGYESGSGARGCGFLCWNNNNSKTRRAVKVKGTPVGARKARRFTLFGECGKKPKKKECKR 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00025 1190 SUPERFAMILY post-AAA+ oligomerization domain-like 658 759 IPR008921 GO:0003677|GO:0006260
Car07g00025 1190 MobiDBLite consensus disorder prediction 779 799 - -
Car07g00025 1190 MobiDBLite consensus disorder prediction 234 253 - -
Car07g00025 1190 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 142 1126 - -
Car07g00025 1190 SMART AAA_5 443 594 IPR003593 -
Car07g00025 1190 MobiDBLite consensus disorder prediction 193 218 - -
Car07g00025 1190 Gene3D - 402 585 IPR027417 -
Car07g00025 1190 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 411 761 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Car07g00025 1190 Coils Coil 70 90 - -
Car07g00025 1190 Pfam DNA polymerase III subunits gamma and tau domain III 641 761 IPR022754 GO:0003887
Car07g00025 1190 MobiDBLite consensus disorder prediction 108 133 - -
Car07g00025 1190 MobiDBLite consensus disorder prediction 306 350 - -
Car07g00025 1190 MobiDBLite consensus disorder prediction 21 64 - -
Car07g00025 1190 CDD AAA 425 584 - -
Car07g00025 1190 Gene3D - 651 765 - -
Car07g00025 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 633 IPR027417 -
Car07g00025 1190 MobiDBLite consensus disorder prediction 331 345 - -
Car07g00025 1190 Pfam DNA polymerase III, delta subunit 426 587 - -
Car07g00025 1190 Coils Coil 720 750 - -
Car07g00025 1190 MobiDBLite consensus disorder prediction 24 64 - -
Car07g00025 1190 CDD HLD_clamp_pol_III_gamma_tau 587 650 IPR045085 -
Car07g00025 1190 MobiDBLite consensus disorder prediction 800 818 - -
Car07g00025 1190 MobiDBLite consensus disorder prediction 765 818 - -
Car07g00025 1190 Gene3D - 589 650 - -
Car07g00025 1190 PANTHER PROTEIN STICHEL-LIKE 1 142 1126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00025 Car-Chr7 298688 305671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00025 407 702 Core DNA Replication Machinery Family AT1G21690 24.342 3.01e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00025 - - gmx:100814391 1595.48