Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00021 ATGGAACCTTCTTCAAGGCAAGATGGAGGAGGAGAAAATATCCCAATTCCAATAAACATTTCAAGTGTTGGTACTGTTAATGGACATGGTGGTGCTCACAATATGATTCATCATCATAATCAACTACACAATGTTATAACATCTTCCACAGTGGCAGTGGCAGTGGCAGTAGCAGCACCTCATAACAACCCTTGTTCAAATGGGACAACAGTTGGAGAGGTAGATGAGTCAAGCTACAAGAAAGTGGATGTGGTAGTTGTAAGGTACAGAGAATGCCTAAAGAACCATGCTGCTGCAATGGGAGGGAATGCAACAGATGGTTGTGGTGAGTTCATGCCAAATGGAGAAGAGGGTACCATAGAAGCACTTATCTGCTCTGCCTGTCATTGTCACAGAAACTTTCACAGAAAAGAAGTTGAAGGTGGTGGTGGTGGTAGTATTACTGATGACATGCTGGATAACTACCACCATCACCACTCCTCCAACTTCAACTTCAACTTCAACAACAGAAAATTCATGTTACCAGCTCTTCCTGACCCTCATATTGGTTACCACCctactgctgctgctgctgcAGGTAATAACAACAGCAACATTCTTCCTTCTAGAGTTGTACCTCCACATGTGCATGGACATGGCCATATCATCATGCCTTTCAACTACAACATACCATCCCTTCCTTCTGAATCTGATGAACAAGAAGAGGGTAGACACACACAGGTACCAGTAGTGAAGAAAAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGACAAAATGCTGAGCTTTGCTGAAAAAGTTGGTTGGAAAATTCAGAAGCAGGAGGAATCACTGGTGCAACAGTTTTGCcaagagattggagtcagaagaagagtgctcaagGCTCAACAAGCCATCATCGTATTCATATTTGGAATACGGACTCTGACCTGA 933 0.4062 MEPSSRQDGGGENIPIPINISSVGTVNGHGGAHNMIHHHNQLHNVITSSTVAVAVAVAAPHNNPCSNGTTVGEVDESSYKKVDVVVVRYRECLKNHAAAMGGNATDGCGEFMPNGEEGTIEALICSACHCHRNFHRKEVEGGGGGSITDDMLDNYHHHHSSNFNFNFNNRKFMLPALPDPHIGYHPTAAAAAGNNNSNILPSRVVPPHVHGHGHIIMPFNYNIPSLPSESDEQEEGRHTQVPVVKKRFRTKFTQEQKDKMLSFAEKVGWKIQKQEESLVQQFCQEIGVRRRVLKAQQAIIVFIFGIRTLT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00021 310 Gene3D - 229 295 - -
Car07g00021 310 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 34 294 - -
Car07g00021 310 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 294 - -
Car07g00021 310 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 89 138 IPR006456 -
Car07g00021 310 Pfam ZF-HD protein dimerisation region 87 139 IPR006456 -
Car07g00021 310 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 245 294 IPR006455 -
Car07g00021 310 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 88 139 IPR006456 -
Car07g00021 310 SUPERFAMILY Homeodomain-like 244 294 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00021 Car-Chr7 272550 273775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00021 86 294 ZF-HD Transcription Factor Family AT1G14440 50.679 1.51e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car07g00021 ZF-HD_dimer 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00021 - - mtr:MTR_4g134580 294.278