Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g00011 atggaaatggaggaggagagCCTGAGGGACGTAGAGCAGATGCTGGGGAAGGAGGAGGATGATATAGGAGGGATGTCAAGATCAATATCAGAATATGAGGGGTTGAGGCTCAGAGACCCTCTTCTTCTCAAGAATAACAGATTGAATACTACTTCACAAATTGCCATTGTTGGAGCCAATGTTTGTCCAATCGAAAGTCTCGACTACGAGATCATAGAGAATGATCTATTCAAGCAAGACTGGAGATCAAGAGCAAGGGGTGAGATAAGACAGTATCTCCTCTTGAAATGGATGCTCGCACTTCTTATTGGTTTAGGCACAGGCCTTGTTGCCTTCTTCAATAACATTGGAGTTGAGAATATTGCTGGTTTCAAGCTTCTGCTCACCAATGATCTCATGCTTAACCACAAGTATCATCAGGCCTTTGCTGTCTATGCTGGTTGTAACATGCTTTTAGCCATGGCTGCAGCTGCCCTTTGTGCCTTCGTTGCCCCTGCAGCAGCAGGATCTGGCATACCTGAGGTCAAGGCATATCTCAATGGTGTAGATGCTCCTTCTATACTGGCTCCAAGCACCTTATTTGTCAAAATTTTTGGTTCAATTTTTGGGGTTGCAGCTGGTTTTGTTGTGGGTAAAGAAGGACCTATGGTGCATACTGGTGCTTGCATAGGTAATTTACTTGGACAAGGTGGTTCTAAAAAATATGGACTGACATGGAAAGGGTTCAAATATTTTAAAAATGATAGAGATCGAAGGGATTTGATCACGTGCGGTGCGGCTGCTGGTGTTGCTGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTtcttgGTGGAGGAGTGCTCTCCTATGGCGAACATTTTTTACTGCAGCTGTAGTGGCTGTAGTGTTGAGAGGTTTCATGGAATATTGTAAGGGTGAAAATTGTGGTCTTTTTGGAGAAGGGGGGTTGATAATGTTTGATGTTAATTCAGTAAAGCCTGCATACAGCATACCTGATCTACTTGTAGTTATATTTCTTGGTGTTATTGGAGGTCTTTTGGGAAGCCTCTACAATTATCTTGTCGATAAGGTCCTTCGCACTTACAGCGTCATTAATGAGAAAGGCCCTATATTTAAAATAATGCTTGTGATGATTTTATCCTTTCTGACCTCTTGCTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCTTGTCCACCTCATTTGGGGGATCAATGTCCAACTGTAGGGCGTTCTGGACACTACAAGAATTTCCAATGTCCTCCAAACCACTACAATGACCTCGCCTCTCTTTTTTTTACTACCAACGATGATGCTATCCGCAACCTCTTTATTGCCGGCTCCGACAAAAGATTCCTCCTCTCCAGTCTGTTAATATTCTTTGTGACAATCTACATCCTCGGAATCATCACTTATGGCATTGCAATTCCATCGGGGTTGTTTATTCCGGTGATACTTGCAGGGGCTTCGTATGGTCGTGTTGCAGGAAGTCTGTTAAGTCGATTCACAGTTCTGGACGTTGGTTTGTTTGCACTGTTAGGAGCTGCGTCCTTCCTTGGTGGCACGATGAGAATGACAGTTTCTCTTTGTGTGATACTTCTTGAACTCACTAACAACCTCCTCATGCTCCCATTGGTGATGTTGGTACTCCTTATATCCAAGTCTGTAGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGAAATGAAGGGACTGCCTTATTTGGAAGCGCACGCACAACCATACATGAGGCAGTTAATTGCTAGTGATGTTGTTTCTGGTCCTTTGTTTACTTTATCTGGGATTGAAAAAGTGGGGAATATTGTGCACGCTTTAAAGATAACGAGACATAATGGATTTCCAATCATCGACGAGCCTCCTTTCTCAGATGGTCCAGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTCCTTGTACTTGTTAAACACAAGGCATTTACTATGGAGCAAAAGGAGATGCCTTCAATTTGGAACAAGTTCAGGGCACATGATTTTGGGAAAGCAGGTTCAGGGAAGGGGATAAGGCTGGAGGATATAGAGTTATCAGAGGAGGAGATGGAAATGTATGTTGACCTGCATCCTATTACTAACAGGTCACCTTATACAGTTGTGGAAACAACCTCTCTAGCTAAAACTGCAGTTCTTTTCCGCGAGCTTGGTCTCAGACACTTGTTGGTCGTGCCAAAGACACCCGGAAGACCTCCAATTGTAGGGATCCTCACAAGGCACGATTTCATGCCCGAGCATATAGTGGGACTATACCCGCACTGCAACCCCGCAACTAAATAG 2340 0.4355 MEMEEESLRDVEQMLGKEEDDIGGMSRSISEYEGLRLRDPLLLKNNRLNTTSQIAIVGANVCPIESLDYEIIENDLFKQDWRSRARGEIRQYLLLKWMLALLIGLGTGLVAFFNNIGVENIAGFKLLLTNDLMLNHKYHQAFAVYAGCNMLLAMAAAALCAFVAPAAAGSGIPEVKAYLNGVDAPSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIGNLLGQGGSKKYGLTWKGFKYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTAAVVAVVLRGFMEYCKGENCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSVINEKGPIFKIMLVMILSFLTSCCSFGVPWLSKCIPCPPHLGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVTIYILGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSRFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAQPYMRQLIASDVVSGPLFTLSGIEKVGNIVHALKITRHNGFPIIDEPPFSDGPELCGLVLRSHLLVLVKHKAFTMEQKEMPSIWNKFRAHDFGKAGSGKGIRLEDIELSEEEMEMYVDLHPITNRSPYTVVETTSLAKTAVLFRELGLRHLLVVPKTPGRPPIVGILTRHDFMPEHIVGLYPHCNPATK 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g00011 779 Gene3D - 587 767 IPR046342 -
Car07g00011 779 PRINTS Chloride channel signature 165 182 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PRINTS Chloride channel signature 196 215 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PRINTS Chloride channel signature 260 279 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 Coils Coil 1 21 - -
Car07g00011 779 SUPERFAMILY Clc chloride channel 74 589 IPR014743 -
Car07g00011 779 ProSiteProfiles CBS domain profile. 713 778 IPR000644 -
Car07g00011 779 CDD CBS_pair_voltage-gated_CLC_euk_bac 598 765 - -
Car07g00011 779 Gene3D Clc chloride channel 88 586 - -
Car07g00011 779 SUPERFAMILY CBS-domain pair 590 763 IPR046342 -
Car07g00011 779 Pfam CBS domain 714 762 IPR000644 -
Car07g00011 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 31 775 - -
Car07g00011 779 CDD ClC_6_like 65 586 - -
Car07g00011 779 PRINTS Plant CLC chloride channel signature 70 78 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car07g00011 779 PRINTS Plant CLC chloride channel signature 281 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car07g00011 779 PRINTS Plant CLC chloride channel signature 295 305 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car07g00011 779 PRINTS Plant CLC chloride channel signature 313 320 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car07g00011 779 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247|GO:0006821|GO:0016020
Car07g00011 779 SMART cbs_1 716 767 IPR000644 -
Car07g00011 779 SMART cbs_1 606 659 IPR000644 -
Car07g00011 779 Pfam Voltage gated chloride channel 153 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Car07g00011 779 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 31 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g00011 Car-Chr7 174185 177217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g00011 24 776 Ion Channels AT5G49890 75.594 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g00011 K05016 - jre:108988922 1134.01